hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-12334597/chunk_1/iprscan-20090618-12334597.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk06583 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02218.6.fs Repeat in HS1/Cortactin 439.6 1.9e-145 7 PF02218.6.ls Repeat in HS1/Cortactin 453.5 2.5e-133 7 PF00018.18.ls SH3 domain 90.1 6.3e-24 1 PF00018.18.fs SH3 domain 88.2 2.4e-23 1 PF07653.7.fs Variant SH3 domain 44.5 3.6e-12 1 PF07653.7.ls Variant SH3 domain 46.2 1e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02218.6.fs 1/7 93 129 .. 1 37 [] 66.2 1.9e-21 PF02218.6.ls 1/7 93 129 .. 1 37 [] 68.2 2.5e-17 PF02218.6.ls 2/7 130 166 .. 1 37 [] 72.7 1.1e-18 PF02218.6.fs 2/7 130 166 .. 1 37 [] 70.7 5.8e-23 PF02218.6.ls 3/7 167 203 .. 1 37 [] 74.4 3.3e-19 PF02218.6.fs 3/7 167 203 .. 1 37 [] 72.4 1.6e-23 PF02218.6.ls 4/7 204 240 .. 1 37 [] 69.9 7.4e-18 PF02218.6.fs 4/7 204 240 .. 1 37 [] 67.9 5e-22 PF02218.6.ls 5/7 241 277 .. 1 37 [] 68.5 2e-17 PF02218.6.fs 5/7 241 277 .. 1 37 [] 66.5 1.5e-21 PF02218.6.fs 6/7 278 314 .. 1 37 [] 68.1 4.4e-22 PF02218.6.ls 6/7 278 314 .. 1 37 [] 70.1 6.7e-18 PF02218.6.fs 7/7 315 351 .. 1 37 [] 27.7 1.1e-08 PF02218.6.ls 7/7 315 351 .. 1 37 [] 29.7 9.4e-06 PF00018.18.fs 1/1 505 559 .. 1 59 [] 88.2 2.4e-23 PF00018.18.ls 1/1 505 559 .. 1 59 [] 90.1 6.3e-24 PF07653.7.fs 1/1 506 559 .. 1 69 [] 44.5 3.6e-12 PF07653.7.ls 1/1 506 559 .. 1 69 [] 46.2 1e-10 Alignments of top-scoring domains: PF02218.6.fs: domain 1 of 7, from 93 to 129: score 66.2, E = 1.9e-21 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* G+GGkfGv++dr+DksAvG++yq+k++kh+sq D+++ fk06583 93 GYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 129 PF02218.6.ls: domain 1 of 7, from 93 to 129: score 68.2, E = 2.5e-17 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* G+GGkfGv++dr+DksAvG++yq+k++kh+sq D+++ fk06583 93 GYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 129 PF02218.6.ls: domain 2 of 7, from 130 to 166: score 72.7, E = 1.1e-18 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGkfGvq+drvD+sAvGf+yq+k+ekh+sqkDys+ fk06583 130 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSS 166 PF02218.6.fs: domain 2 of 7, from 130 to 166: score 70.7, E = 5.8e-23 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGkfGvq+drvD+sAvGf+yq+k+ekh+sqkDys+ fk06583 130 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSS 166 PF02218.6.ls: domain 3 of 7, from 167 to 203: score 74.4, E = 3.3e-19 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGk+Gvq+drvDksAvGfdyq+k+ekhesq+Dysk fk06583 167 GFGGKYGVQADRVDKSAVGFDYQGKTEKHESQRDYSK 203 PF02218.6.fs: domain 3 of 7, from 167 to 203: score 72.4, E = 1.6e-23 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGk+Gvq+drvDksAvGfdyq+k+ekhesq+Dysk fk06583 167 GFGGKYGVQADRVDKSAVGFDYQGKTEKHESQRDYSK 203 PF02218.6.ls: domain 4 of 7, from 204 to 240: score 69.9, E = 7.4e-18 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGk+G++kd+vDksAvGf+yq+k+ekhesqkDy+k fk06583 204 GFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVK 240 PF02218.6.fs: domain 4 of 7, from 204 to 240: score 67.9, E = 5e-22 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGk+G++kd+vDksAvGf+yq+k+ekhesqkDy+k fk06583 204 GFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVK 240 PF02218.6.ls: domain 5 of 7, from 241 to 277: score 68.5, E = 2e-17 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGkfGvq+dr+Dk+A+G+d+qek++ hesqkDy + fk06583 241 GFGGKFGVQTDRQDKCALGWDHQEKLQLHESQKDYKT 277 PF02218.6.fs: domain 5 of 7, from 241 to 277: score 66.5, E = 1.5e-21 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGkfGvq+dr+Dk+A+G+d+qek++ hesqkDy + fk06583 241 GFGGKFGVQTDRQDKCALGWDHQEKLQLHESQKDYKT 277 PF02218.6.fs: domain 6 of 7, from 278 to 314: score 68.1, E = 4.4e-22 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGkfGvq++r+D++AvGfdy+ek++khesq+Dysk fk06583 278 GFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQDYSK 314 PF02218.6.ls: domain 6 of 7, from 278 to 314: score 70.1, E = 6.7e-18 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGkfGvq++r+D++AvGfdy+ek++khesq+Dysk fk06583 278 GFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQDYSK 314 PF02218.6.fs: domain 7 of 7, from 315 to 351: score 27.7, E = 1.1e-08 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGk+Gvqkdr+Dk A f+ +v+ ++ ++ fk06583 315 GFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVE 351 PF02218.6.ls: domain 7 of 7, from 315 to 351: score 29.7, E = 9.4e-06 *->GfGGkfGvqkdrvDksAvGfdyqekvekhesqkDysk<-* GfGGk+Gvqkdr+Dk A f+ +v+ ++ ++ fk06583 315 GFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVE 351 PF00018.18.fs: domain 1 of 1, from 505 to 559: score 88.2, E = 2.4e-23 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++vALYDY+a ++dE+sF + D+it++e+ dd gWW+g +k G+ fk06583 505 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCK---GR 547 eGliPsNYVepv<-* Gl+P+NYVe+ fk06583 548 YGLFPANYVELR 559 PF00018.18.ls: domain 1 of 1, from 505 to 559: score 90.1, E = 6.3e-24 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++vALYDY+a ++dE+sF + D+it++e+ dd gWW+g +k G+ fk06583 505 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCK---GR 547 eGliPsNYVepv<-* Gl+P+NYVe+ fk06583 548 YGLFPANYVELR 559 PF07653.7.fs: domain 1 of 1, from 506 to 559: score 44.5, E = 3.6e-12 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a+ dy a ++ +e +s+ +d++ i ++ ddgww+ fk06583 506 TAVALYDYQA-AGDDE------ISFDPDDIITNI----EMIDDGWWR 541 geslggGrrrRGlvPssaveel<-* g + +Gr+ Gl+P+++ve fk06583 542 GVC--KGRY--GLFPANYVELR 559 PF07653.7.ls: domain 1 of 1, from 506 to 559: score 46.2, E = 1e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a+ dy a ++ +e +s+ +d++ i ++ ddgww+ fk06583 506 TAVALYDYQA-AGDDE------ISFDPDDIITNI----EMIDDGWWR 541 geslggGrrrRGlvPssaveel<-* g + +Gr+ Gl+P+++ve fk06583 542 GVC--KGRY--GLFPANYVELR 559 //