hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-04202799/chunk_1/iprscan-20080811-04202799.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk07061 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00930.11.ls Dipeptidyl peptidase IV (DPP IV) N-termi 576.0 3.4e-170 1 PF00930.11.fs Dipeptidyl peptidase IV (DPP IV) N-termi 574.1 1.3e-169 1 PF00326.11.ls Prolyl oligopeptidase family 130.0 6e-36 1 PF00326.11.fs Prolyl oligopeptidase family 128.1 2.3e-35 1 PF07676.3.fs WD40-like Beta Propeller Repeat 15.7 0.00016 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00930.11.ls 1/1 172 538 .. 1 419 [] 576.0 3.4e-170 PF00930.11.fs 1/1 172 538 .. 1 419 [] 574.1 1.3e-169 PF07676.3.fs 2/2 411 439 .. 9 41 .] 12.3 0.002 PF00326.11.ls 1/1 618 827 .. 1 228 [] 130.0 6e-36 PF00326.11.fs 1/1 618 827 .. 1 228 [] 128.1 2.3e-35 Alignments of top-scoring domains: PF00930.11.ls: domain 1 of 1, from 172 to 538: score 576.0, E = 3.4e-170 *->SpDgkylLlatnyekiwRHSytasYyiyDletgkvtvepLppgdvee SpD++y+L+++n+e+i+ HSyt+ Y++ + +g + ++L+p+ e fk07061 172 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPP---E 213 neegkiqyakwSPdGnklafVrdNNLYvrelatgdgketqiTsDGksngi + ++k+qya w P+G++l+f+++NN+Y++ ++++ +++++ s+Gk+++i fk07061 214 VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK--QAIRVVSTGKEGVI 261 fNGlaDWVYEEEvfgrnsalWWSPDgsrLAflrfDeseVpiitlpyytdd +NGl+DW YEEE++ ++ a+WWSPDg+rLA++ +++s Vpi++lp yt+ fk07061 262 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 311 espppleqYPevreikfYPKAGapNPtVsLfvydltdasgktvlpmdeei +YP v+ ++ YPKAG+ NP++sL+v++l +++++ l e+ fk07061 312 -------IYPTVKPYH-YPKAGSENPSISLHVIGL--NGPTHDL----EM 347 vppddlsdaedyYitrVkWlvpdekrllvqwlnRdQnvldlvlcdyDtfe +ppdd + + +yYit+VkW ++++k ++v wlnR Qnv++l+lc D+ + fk07061 348 MPPDDPRMR-EYYITMVKW-ATSTK-VAVTWLNRAQNVSILTLC--DA-T 391 skgrtvvllpprehyeetsdgWvghrelhhspvflppnpslkrdgsgflw + g ++ ++ e++s++W++ ++ +pvf+ +dg +f++ fk07061 392 T-GVCTKKH------EDESEAWLH--RQNEEPVFS-------KDGRKFFF 425 isedrdGg.G.ykHLylydldgksseecppr.ivqlTsGnWeVtsgilgv i +Gg+G++ H+ + +++ +ss + +i+ +TsG+W+Vt+ il++ fk07061 426 IRAIPQGGrGkFYHITVSSSQPNSS----NDnIQSITSGDWDVTK-ILAY 470 DekrglvYFtateyEdsgdPgerhLYsVsldstsggepqcLTcnsgdhrC Dek++++YF++te d P++r+LYs+++ + ++ qcL+c+ ++ C fk07061 471 DEKGNKIYFLSTE--DL--PRRRQLYSANTV--GNFNRQCLSCDLVEN-C 513 tyysasfSpngkyyvltysgPdtPp<-* ty+sasfS+++++++l+++gP++P+ fk07061 514 TYFSASFSHSMDFFLLKCEGPGVPM 538 PF00930.11.fs: domain 1 of 1, from 172 to 538: score 574.1, E = 1.3e-169 *->SpDgkylLlatnyekiwRHSytasYyiyDletgkvtvepLppgdvee SpD++y+L+++n+e+i+ HSyt+ Y++ + +g + ++L+p+ e fk07061 172 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPP---E 213 neegkiqyakwSPdGnklafVrdNNLYvrelatgdgketqiTsDGksngi + ++k+qya w P+G++l+f+++NN+Y++ ++++ +++++ s+Gk+++i fk07061 214 VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK--QAIRVVSTGKEGVI 261 fNGlaDWVYEEEvfgrnsalWWSPDgsrLAflrfDeseVpiitlpyytdd +NGl+DW YEEE++ ++ a+WWSPDg+rLA++ +++s Vpi++lp yt+ fk07061 262 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 311 espppleqYPevreikfYPKAGapNPtVsLfvydltdasgktvlpmdeei +YP v+ ++ YPKAG+ NP++sL+v++l +++++ l e+ fk07061 312 -------IYPTVKPYH-YPKAGSENPSISLHVIGL--NGPTHDL----EM 347 vppddlsdaedyYitrVkWlvpdekrllvqwlnRdQnvldlvlcdyDtfe +ppdd + + +yYit+VkW ++++k ++v wlnR Qnv++l+lc D+ + fk07061 348 MPPDDPRMR-EYYITMVKW-ATSTK-VAVTWLNRAQNVSILTLC--DA-T 391 skgrtvvllpprehyeetsdgWvghrelhhspvflppnpslkrdgsgflw + g ++ ++ e++s++W++ ++ +pvf+ +dg +f++ fk07061 392 T-GVCTKKH------EDESEAWLH--RQNEEPVFS-------KDGRKFFF 425 isedrdGg.G.ykHLylydldgksseecppr.ivqlTsGnWeVtsgilgv i +Gg+G++ H+ + +++ +ss + +i+ +TsG+W+Vt+ il++ fk07061 426 IRAIPQGGrGkFYHITVSSSQPNSS----NDnIQSITSGDWDVTK-ILAY 470 DekrglvYFtateyEdsgdPgerhLYsVsldstsggepqcLTcnsgdhrC Dek++++YF++te d P++r+LYs+++ + ++ qcL+c+ ++ C fk07061 471 DEKGNKIYFLSTE--DL--PRRRQLYSANTV--GNFNRQCLSCDLVEN-C 513 tyysasfSpngkyyvltysgPdtPp<-* ty+sasfS+++++++l+++gP++P+ fk07061 514 TYFSASFSHSMDFFLLKCEGPGVPM 538 PF07676.3.fs: domain 2 of 2, from 411 to 439: score 12.3, E = 0.002 *->eggPswSPDGktivFssnrgdgddgsGsfdiyv<-* +++P++S DG++++F + + + g+G+f y+ fk07061 411 NEEPVFSKDGRKFFFIRAIP--QGGRGKF--YH 439 PF00326.11.ls: domain 1 of 1, from 618 to 827: score 130.0, E = 6e-36 *->psFsvwnlqlladrGyvvavaniRGsggyGrawhdagkrdlgqnefd + +s w++ +++ G vv+ +++RGsg++G + + ++r+lg e + fk07061 618 FEVS-WETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEK 663 DfiaaaeyLieqgpyvDpdrlaiwGgSyGGyltgaal.....nkqrpdlF D+++a++ ++++ y+D r+a++G yGGyl+ +l+ +++n +++ F fk07061 664 DQMEAVRTMLKEQ-YIDRTRVAVFGKDYGGYLSTYILpakgeN--QGQTF 710 kaavavvpvvDwltymldtslpyslteaeymewgnpwdeneegYrylspy ++ a +p++D y + + e +y++ + d n++ Y ++ + fk07061 711 TCGSALSPITDFKLYASA------FSE-RYLGLHGL-D-NRA-Y-EMTKV 749 spydnvkaqaypplLlihGlhDdRVppaealklvaaLqalktGknpvlll ++ + + +L+ih ++D+ +++++++ l++ L+ +Gk ++ l+ fk07061 750 AHRVSAL--EEQQFLIIHPTADEKIHFQHTAELITQLI---RGKANYSLQ 794 ifpdeGHLSgggkprnkrlkeyarelaFllkvlggt<-* i+pde H + + + k+ ++y+ + F+++++ ++ fk07061 795 IYPDESH--YFTSSSLKQ-HLYRSIINFFVECFRIQ 827 PF00326.11.fs: domain 1 of 1, from 618 to 827: score 128.1, E = 2.3e-35 *->psFsvwnlqlladrGyvvavaniRGsggyGrawhdagkrdlgqnefd + +s w++ +++ G vv+ +++RGsg++G + + ++r+lg e + fk07061 618 FEVS-WETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEK 663 DfiaaaeyLieqgpyvDpdrlaiwGgSyGGyltgaal.....nkqrpdlF D+++a++ ++++ y+D r+a++G yGGyl+ +l+ +++n +++ F fk07061 664 DQMEAVRTMLKEQ-YIDRTRVAVFGKDYGGYLSTYILpakgeN--QGQTF 710 kaavavvpvvDwltymldtslpyslteaeymewgnpwdeneegYrylspy ++ a +p++D y + + e +y++ + d n++ Y ++ + fk07061 711 TCGSALSPITDFKLYASA------FSE-RYLGLHGL-D-NRA-Y-EMTKV 749 spydnvkaqaypplLlihGlhDdRVppaealklvaaLqalktGknpvlll ++ + + +L+ih ++D+ +++++++ l++ L+ +Gk ++ l+ fk07061 750 AHRVSAL--EEQQFLIIHPTADEKIHFQHTAELITQLI---RGKANYSLQ 794 ifpdeGHLSgggkprnkrlkeyarelaFllkvlggt<-* i+pde H + + + k+ ++y+ + F+++++ ++ fk07061 795 IYPDESH--YFTSSSLKQ-HLYRSIINFFVECFRIQ 827 //