hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-04275396/chunk_1/iprscan-20080811-04275396.nocrc
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Query sequence: fk07131
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF04433.7.ls    SWIRM domain                            157.8    2.7e-44   1
PF04433.7.fs    SWIRM domain                            155.8      1e-43   1
PF00249.21.fs   Myb-like DNA-binding domain              45.4    1.9e-11   1
PF00249.21.ls   Myb-like DNA-binding domain              47.1    5.4e-11   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF04433.7.fs      1/1     429   517 ..     1    95 []   155.8    1e-43
PF04433.7.ls      1/1     429   517 ..     1    95 []   157.8  2.7e-44
PF00249.21.fs     1/1     633   678 ..     1    65 []    45.4  1.9e-11
PF00249.21.ls     1/1     633   678 ..     1    65 []    47.1  5.4e-11

Alignments of top-scoring domains:
PF04433.7.fs: domain 1 of 1, from 429 to 517: score 155.8, E = 1e-43
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      ++++sya+w+d++ ++ iE++ +pEff+gk  +++ktpe YL++Rn+
     fk07131   429    IIIPSYAAWFDYNSVHAIERRALPEFFNGK--NKSKTPEIYLAYRNF 473  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   +i+++rlnp++ylt t++rrnlag    Dv++++rv++FLe+wG+INy  
     fk07131   474 MIDTYRLNPQEYLTSTACRRNLAG----DVCAIMRVHAFLEQWGLINY   517  

                   *
                    
     fk07131     -   -    

PF04433.7.ls: domain 1 of 1, from 429 to 517: score 157.8, E = 2.7e-44
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      ++++sya+w+d++ ++ iE++ +pEff+gk  +++ktpe YL++Rn+
     fk07131   429    IIIPSYAAWFDYNSVHAIERRALPEFFNGK--NKSKTPEIYLAYRNF 473  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   +i+++rlnp++ylt t++rrnlag    Dv++++rv++FLe+wG+INy  
     fk07131   474 MIDTYRLNPQEYLTSTACRRNLAG----DVCAIMRVHAFLEQWGLINY   517  

                   *
                    
     fk07131     -   -    

PF00249.21.fs: domain 1 of 1, from 633 to 678: score 45.4, E = 1.9e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      + +Wt++E+ ll+ea+e++  +           W+k++e++g     
     fk07131   633    TREWTEQETLLLLEALEMYKDD-----------WNKVSEHVG----- 663  

                   nvlgrtaeqcklryykyk<-*
                      +rt  +c+l+++++    
     fk07131   664 ---SRTQDECILHFLRLP    678  

PF00249.21.ls: domain 1 of 1, from 633 to 678: score 47.1, E = 5.4e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      + +Wt++E+ ll+ea+e++  +           W+k++e++g     
     fk07131   633    TREWTEQETLLLLEALEMYKDD-----------WNKVSEHVG----- 663  

                   nvlgrtaeqcklryykyk<-*
                      +rt  +c+l+++++    
     fk07131   664 ---SRTQDECILHFLRLP    678  

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