hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-04443514/chunk_1/iprscan-20080811-04443514.nocrc
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Query sequence: fk07246
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF02257.6.fs    RFX DNA-binding domain                  200.0    2.7e-61   1
PF02257.6.ls    RFX DNA-binding domain                  202.0    1.3e-57   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF02257.6.fs      1/1     135   217 ..     1    84 []   200.0  2.7e-61
PF02257.6.ls      1/1     135   217 ..     1    84 []   202.0  1.3e-57

Alignments of top-scoring domains:
PF02257.6.fs: domain 1 of 1, from 135 to 217: score 200.0, E = 2.7e-61
                   *->ddaseqNresnrqvfPAtlqWLkenyEeqedvclPRsklYahYlkhC
                       +++e+Nr+s+++++PAtlqWL+enyE++e+vc+PRs+lY+hYl++C
     fk07246   135    NEEKENNRASKPHSTPATLQWLEENYEIAEGVCIPRSALYMHYLDFC 181  

                   eslaClkPlnaASFGKLIRsvFpdLkTRRLGtRGqSK<-*
                   e+++ ++P+naASFGK+IR++Fp+L+TRRLGtRGqSK   
     fk07246   182 EKND-TQPVNAASFGKIIRQQFPQLTTRRLGTRGQSK    217  

PF02257.6.ls: domain 1 of 1, from 135 to 217: score 202.0, E = 1.3e-57
                   *->ddaseqNresnrqvfPAtlqWLkenyEeqedvclPRsklYahYlkhC
                       +++e+Nr+s+++++PAtlqWL+enyE++e+vc+PRs+lY+hYl++C
     fk07246   135    NEEKENNRASKPHSTPATLQWLEENYEIAEGVCIPRSALYMHYLDFC 181  

                   eslaClkPlnaASFGKLIRsvFpdLkTRRLGtRGqSK<-*
                   e+++ ++P+naASFGK+IR++Fp+L+TRRLGtRGqSK   
     fk07246   182 EKND-TQPVNAASFGKIIRQQFPQLTTRRLGTRGQSK    217  

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