hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-04561872/chunk_1/iprscan-20080811-04561872.nocrc
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Query sequence: fk07313
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00804.15.fs Syntaxin                                        86.7    1.2e-23   1
PF00804.15.ls Syntaxin                                        88.6    1.7e-23   1
PF05739.9.fs SNARE domain                                    80.5    1.4e-21   1
PF05739.9.ls SNARE domain                                    80.8    3.8e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00804.15.fs   1/1      75   181 ..     1   110 []    86.7  1.2e-23
PF00804.15.ls   1/1      75   181 ..     1   110 []    88.6  1.7e-23
PF05739.9.fs   1/1     236   292 ..     1    57 [.    80.5  1.4e-21
PF05739.9.ls   1/1     236   298 ..     1    63 []    80.8  3.8e-21

Alignments of top-scoring domains:
PF00804.15.fs: domain 1 of 1, from 75 to 181: score 86.7, E = 1.2e-23
                   *->slpeFfeekveeIrnniekisqkleeLaklhkkilsppdsdveikel
                      ++p++++  v+eI++++ +i+qk++eLa+lh+k+l  p+ d + +e 
     fk07313    75    PPPKWVDG-VDEIQYDVGRIKQKMKELASLHDKHLNRPTLD-DSSEE 119  

                   rrkleqliteinqlakklkrklkale.eanlseersqlsssdtrirktqt
                   ++ +e +++ei+ql+++++r ++al ++a +++e++++  ++ ++  +q 
     fk07313   120 EHAIEITTQEITQLFHRCQRAVQALPsRARACSEQEGRLLGNVVASLAQA 169  

                   sllsGlrkkfkevm<-*
                   ++    ++ f+ ++   
     fk07313   170 LQEL--STSFRHAQ    181  

PF00804.15.ls: domain 1 of 1, from 75 to 181: score 88.6, E = 1.7e-23
                   *->slpeFfeekveeIrnniekisqkleeLaklhkkilsppdsdveikel
                      ++p++++  v+eI++++ +i+qk++eLa+lh+k+l  p+ d + +e 
     fk07313    75    PPPKWVDG-VDEIQYDVGRIKQKMKELASLHDKHLNRPTLD-DSSEE 119  

                   rrkleqliteinqlakklkrklkale.eanlseersqlsssdtrirktqt
                   ++ +e +++ei+ql+++++r ++al ++a +++e++++  ++ ++  +q 
     fk07313   120 EHAIEITTQEITQLFHRCQRAVQALPsRARACSEQEGRLLGNVVASLAQA 169  

                   sllsGlrkkfkevm<-*
                   ++    ++ f+ ++   
     fk07313   170 LQEL--STSFRHAQ    181  

PF05739.9.fs: domain 1 of 1, from 236 to 292: score 80.5, E = 1.4e-21
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                      eR++e++++ +si++L+++f+dlg +++eQg++lDrId+nve++  +
     fk07313   236    EREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIK 282  

                   verankrLkk<-*
                   +e++ k+L k   
     fk07313   283 TEDGLKQLHK    292  

PF05739.9.ls: domain 1 of 1, from 236 to 298: score 80.8, E = 3.8e-21
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                      eR++e++++ +si++L+++f+dlg +++eQg++lDrId+nve++  +
     fk07313   236    EREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIK 282  

                   verankrLkkaaryqk<-*
                   +e++ k+L k + +     
     fk07313   283 TEDGLKQLHKDFSHVE    298  

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