hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-05015206/chunk_1/iprscan-20080811-05015206.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk07620 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00171.12.fs Aldehyde dehydrogenase family 861.8 4.6e-265 1 PF00171.12.ls Aldehyde dehydrogenase family 863.8 7.5e-257 1 PF00551.9.ls Formyl transferase 272.3 9.1e-79 1 PF00551.9.fs Formyl transferase 270.4 3.3e-78 1 PF02911.8.fs Formyl transferase, C-terminal domain 120.4 7.6e-35 1 PF02911.8.ls Formyl transferase, C-terminal domain 122.3 1.3e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00551.9.fs 1/1 53 232 .. 1 198 [] 270.4 3.3e-78 PF00551.9.ls 1/1 53 232 .. 1 198 [] 272.3 9.1e-79 PF02911.8.ls 1/1 257 362 .. 1 104 [] 122.3 1.3e-33 PF02911.8.fs 1/1 257 362 .. 1 104 [] 120.4 7.6e-35 PF00171.12.fs 1/1 482 950 .. 1 479 [] 861.8 4.6e-265 PF00171.12.ls 1/1 482 950 .. 1 479 [] 863.8 7.5e-257 Alignments of top-scoring domains: PF00551.9.fs: domain 1 of 1, from 53 to 232: score 270.4, E = 3.3e-78 *->mkiavliSGtgsnlqalldalrkggheiiveivaVvsnkpkarGler mkiav+ G++++ q++++ lrk+ghe v++v++v++k++++++ fk07620 53 MKIAVI--GQSLFGQEVYCHLRKEGHE--VVGVFTVPDKDGKADPLG 95 aeqagiptevfehknitkriikelalskftprdsqrdqeladslaalaaD e++++ + vf+ + ++++ +q+ ++++++++al+a+ fk07620 96 LEAEKDGVPVFKYSR-------------WRAK-GQALPDVVAKYQALGAE 131 livlAgymriLpkeflqafpgkiLNiHPSLLPrfrGaapiqrAleaGdke l+vl+++++++p+e++ a++++ +++HPSLLPr+rGa++i+++l++Gdk+ fk07620 132 LNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKK 181 tGvTvhfvdeelDtGpIlaQkavpilptddtsetlenrvaelEh.kalpe G++++++d++lDtG++l+Qk++++lp ddt++tl+nr++++E k++++ fk07620 182 GGFSIFWADDGLDTGDLLLQKECEVLP-DDTVSTLYNRFLFPEGiKGMVQ 230 al<-* a+ fk07620 231 AV 232 PF00551.9.ls: domain 1 of 1, from 53 to 232: score 272.3, E = 9.1e-79 *->mkiavliSGtgsnlqalldalrkggheiiveivaVvsnkpkarGler mkiav+ G++++ q++++ lrk+ghe v++v++v++k++++++ fk07620 53 MKIAVI--GQSLFGQEVYCHLRKEGHE--VVGVFTVPDKDGKADPLG 95 aeqagiptevfehknitkriikelalskftprdsqrdqeladslaalaaD e++++ + vf+ + ++++ +q+ ++++++++al+a+ fk07620 96 LEAEKDGVPVFKYSR-------------WRAK-GQALPDVVAKYQALGAE 131 livlAgymriLpkeflqafpgkiLNiHPSLLPrfrGaapiqrAleaGdke l+vl+++++++p+e++ a++++ +++HPSLLPr+rGa++i+++l++Gdk+ fk07620 132 LNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKK 181 tGvTvhfvdeelDtGpIlaQkavpilptddtsetlenrvaelEh.kalpe G++++++d++lDtG++l+Qk++++lp ddt++tl+nr++++E k++++ fk07620 182 GGFSIFWADDGLDTGDLLLQKECEVLP-DDTVSTLYNRFLFPEGiKGMVQ 230 al<-* a+ fk07620 231 AV 232 PF02911.8.ls: domain 1 of 1, from 257 to 362: score 122.3, E = 1.3e-33 *->kKEegrIdWskpAeelerkiRAvahPwPgawteflgqdl.akrlkil kKE+++I+W++pAe+++++iR+++ ++Pgawte+++q+l++++ +++ fk07620 257 KKETAKINWDQPAEAIHNWIRGND-KVPGAWTEACEQKLtFFNSTLN 302 rarlleakgaykgaPGeilgvdkeglvvacG.......dGaLrllelQpp ++l++ +g++ +i g++++g+v ++G +++d +L+++ +Q + fk07620 303 TSGLVP-----EGDALPIPGAHRPGVVTKAGlilfgndDKMLLVKNIQLE 347 GKKamkaedflnGrr<-* ++K++ a++f++G++ fk07620 348 DGKMILASNFFKGAA 362 PF02911.8.fs: domain 1 of 1, from 257 to 362: score 120.4, E = 7.6e-35 *->kKEegrIdWskpAeelerkiRAvahPwPgawteflgqdl.akrlkil kKE+++I+W++pAe+++++iR+++ ++Pgawte+++q+l++++ +++ fk07620 257 KKETAKINWDQPAEAIHNWIRGND-KVPGAWTEACEQKLtFFNSTLN 302 rarlleakgaykgaPGeilgvdkeglvvacG.......dGaLrllelQpp ++l++ +g++ +i g++++g+v ++G +++d +L+++ +Q + fk07620 303 TSGLVP-----EGDALPIPGAHRPGVVTKAGlilfgndDKMLLVKNIQLE 347 GKKamkaedflnGrr<-* ++K++ a++f++G++ fk07620 348 DGKMILASNFFKGAA 362 PF00171.12.fs: domain 1 of 1, from 482 to 950: score 861.8, E = 4.6e-265 *->WvdsssGsetievinPathgeviatvpaataeDvdaAvaAAraAfks +vd+++ +t e+inP + g+vi++v++a + Dvd+AvaAA++Af++ fk07620 482 FVDAEGA-KTSETINPTD-GSVICQVSLAQVTDVDKAVAAAKDAFEN 526 GaWaktppaeRariLrkaAdlleeradeLAeletlEtGKplaeArgaevp G W+k ++++R+r+++++Adl+e++++eLA +e+l++G ++ A+ +v+ fk07620 527 GRWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVG 576 raidtlryyAglarkleGetips.dtdapggpgrlaytrRePvGVVgaIt ++i+t+ry+Ag+++k++G tip++ a +++ l++tr+ePvGV+g+I+ fk07620 577 MSIQTFRYFAGWCDKIQGSTIPInQ--A-RPNRNLTLTRKEPVGVCGIII 623 PWNFPlllaawKiAPALAaGNtVVlKPaElTPlsalllAelfeeAGlPaG PWN+Pl++++wK A++LAaGNtVV+KPa TPl+al++Ael +AG+P+G fk07620 624 PWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKG 673 VlNvVtGsGsevGdaLveHPdvdkvsFTGSTavGrrIaeaAalknlKrvt V+Nv++GsGs vG+ L++HPdv+k+ FTGST+vG++I++ +a++n+K+v+ fk07620 674 VVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCAISNVKKVS 723 LELGGKsPlIVfdDADLdaAvegavfgaFfnaGQvCtAgsRllVhesiyD LELGGKsPlI+f+D+DL +Av+ + ++Ffn G++C+A+ Rl+V++si+D fk07620 724 LELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHD 773 eFverlveaakklkvGdPlDpdtdiGPliskkqlekvlsyiedAkeeGAk eFv r+ve ++k+kvG+PlD+dtd+GP+ + ++l k+++y + +++eGA+ fk07620 774 EFVRRVVEEVRKMKVGNPLDRDTDHGPQNHHAHLVKLMEYCQHGVKEGAT 823 lltGGerrpeeaglekGyfvePTvladVtpdmriaqEEiFGPVlsvipFd l++GG + +++ G+f+ePTv+++V ++m ia+EE FGPV+ + +F fk07620 824 LVCGG-----NQVPRPGFFFEPTVFTGVEDHMFIAKEESFGPVMIISRFA 868 ..deeEAIelANdteYGLaagVfTrDldrAlrvarrleaGtVwiNdyttg ++d++ ++ +AN+te+GLa+gVfTrD+++Al+v+++l+aGtV++N+y+ fk07620 869 dgDLDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFVNTYNKT 918 dpeaaqPFGGfKqSGiGgREgGkegleeYtetKtV<-* d++a PFGGfKqSG+G +++G+++l+eY+++KtV fk07620 919 DVAA--PFGGFKQSGFG-KDLGEAALNEYLRVKTV 950 PF00171.12.ls: domain 1 of 1, from 482 to 950: score 863.8, E = 7.5e-257 *->WvdsssGsetievinPathgeviatvpaataeDvdaAvaAAraAfks +vd+++ +t e+inP + g+vi++v++a + Dvd+AvaAA++Af++ fk07620 482 FVDAEGA-KTSETINPTD-GSVICQVSLAQVTDVDKAVAAAKDAFEN 526 GaWaktppaeRariLrkaAdlleeradeLAeletlEtGKplaeArgaevp G W+k ++++R+r+++++Adl+e++++eLA +e+l++G ++ A+ +v+ fk07620 527 GRWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVG 576 raidtlryyAglarkleGetips.dtdapggpgrlaytrRePvGVVgaIt ++i+t+ry+Ag+++k++G tip++ a +++ l++tr+ePvGV+g+I+ fk07620 577 MSIQTFRYFAGWCDKIQGSTIPInQ--A-RPNRNLTLTRKEPVGVCGIII 623 PWNFPlllaawKiAPALAaGNtVVlKPaElTPlsalllAelfeeAGlPaG PWN+Pl++++wK A++LAaGNtVV+KPa TPl+al++Ael +AG+P+G fk07620 624 PWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKG 673 VlNvVtGsGsevGdaLveHPdvdkvsFTGSTavGrrIaeaAalknlKrvt V+Nv++GsGs vG+ L++HPdv+k+ FTGST+vG++I++ +a++n+K+v+ fk07620 674 VVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCAISNVKKVS 723 LELGGKsPlIVfdDADLdaAvegavfgaFfnaGQvCtAgsRllVhesiyD LELGGKsPlI+f+D+DL +Av+ + ++Ffn G++C+A+ Rl+V++si+D fk07620 724 LELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHD 773 eFverlveaakklkvGdPlDpdtdiGPliskkqlekvlsyiedAkeeGAk eFv r+ve ++k+kvG+PlD+dtd+GP+ + ++l k+++y + +++eGA+ fk07620 774 EFVRRVVEEVRKMKVGNPLDRDTDHGPQNHHAHLVKLMEYCQHGVKEGAT 823 lltGGerrpeeaglekGyfvePTvladVtpdmriaqEEiFGPVlsvipFd l++GG + +++ G+f+ePTv+++V ++m ia+EE FGPV+ + +F fk07620 824 LVCGG-----NQVPRPGFFFEPTVFTGVEDHMFIAKEESFGPVMIISRFA 868 ..deeEAIelANdteYGLaagVfTrDldrAlrvarrleaGtVwiNdyttg ++d++ ++ +AN+te+GLa+gVfTrD+++Al+v+++l+aGtV++N+y+ fk07620 869 dgDLDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFVNTYNKT 918 dpeaaqPFGGfKqSGiGgREgGkegleeYtetKtV<-* d++a PFGGfKqSG+G +++G+++l+eY+++KtV fk07620 919 DVAA--PFGGFKQSGFG-KDLGEAALNEYLRVKTV 950 //