hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-05073933/chunk_1/iprscan-20080811-05073933.nocrc
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Query sequence: fk07692
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00622.18.fs SPRY domain                                    105.6    9.5e-30   1
PF00622.18.ls SPRY domain                                    107.4      4e-29   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           29.4    5.9e-10   1
PF00041.11.fs Fibronectin type III domain                     33.5    5.5e-09   1
PF00041.11.ls Fibronectin type III domain                     35.5    1.7e-07   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           31.2    3.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      26    75 ..     1    50 []    29.4  5.9e-10
PF00097.15.ls   1/1      26    75 ..     1    50 []    31.2  3.4e-06
PF00041.11.fs   1/1     362   455 ..     1    84 []    33.5  5.5e-09
PF00041.11.ls   1/1     362   455 ..     1    84 []    35.5  1.7e-07
PF00622.18.ls   1/1     516   633 ..     1   154 []   107.4    4e-29
PF00622.18.fs   1/1     516   633 ..     1   154 []   105.6  9.5e-30

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 26 to 75: score 29.4, E = 5.9e-10
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss......
                      C+ICle +++p      +lpC Hs      C+ C  r l s+  +++
     fk07692    26    CPICLELFEDPL-----LLPCAHS-----LCFNCAHRILVShcatne 62   

                   ....sgnttCplC<-*
                   + ++ + ++Cp C   
     fk07692    63 svesITAFQCPTC    75   

PF00097.15.ls: domain 1 of 1, from 26 to 75: score 31.2, E = 3.4e-06
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss......
                      C+ICle +++p      +lpC Hs      C+ C  r l s+  +++
     fk07692    26    CPICLELFEDPL-----LLPCAHS-----LCFNCAHRILVShcatne 62   

                   ....sgnttCplC<-*
                   + ++ + ++Cp C   
     fk07692    63 svesITAFQCPTC    75   

PF00041.11.fs: domain 1 of 1, from 362 to 455: score 33.5, E = 5.5e-09
                   *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge..
                      P+  +   +t+ + +++t++W+  +    + +Ye++y  +  +g+ +
     fk07692   362    PPTIREELCTA-SYDTITVHWTSDD-EFSVVSYELQY--TIFTGQan 404  

                   ........wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG...Gpe
                     +  ++ + + +vp+ + ++yt++gL+ gt+Y + V+A+n++G++++++
     fk07692   405 vvslcnsaDSWMIVPNIKQnHYTVHGLQSGTKYIFMVKAINQAGsrsSEP 454  

                   S<-*
                       
     fk07692   455 G    455  

PF00041.11.ls: domain 1 of 1, from 362 to 455: score 35.5, E = 1.7e-07
                   *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge..
                      P+  +   +t+ + +++t++W+  +    + +Ye++y  +  +g+ +
     fk07692   362    PPTIREELCTA-SYDTITVHWTSDD-EFSVVSYELQY--TIFTGQan 404  

                   ........wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG...Gpe
                     +  ++ + + +vp+ + ++yt++gL+ gt+Y + V+A+n++G++++++
     fk07692   405 vvslcnsaDSWMIVPNIKQnHYTVHGLQSGTKYIFMVKAINQAGsrsSEP 454  

                   S<-*
                       
     fk07692   455 G    455  

PF00622.18.ls: domain 1 of 1, from 516 to 633: score 107.4, E = 4e-29
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      sG+hY+EV ++++++     ++G+a+ks+              +++ 
     fk07692   516    SGRHYWEVVISGSTW----YAIGLAYKSA--------------PKHE 544  

                   llGddegswgydgsggkkyhagesg.....epyglpfqekgdviGcflDy
                   ++G+++ sw++     ++++++++++++++e+  +p  +  +++G++lDy
     fk07692   545 WIGKNSASWAL-----CRCNNNWVVrhnskEIPIEPAPH-LRRVGILLDY 588  

                   eagVtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgg
                   ++g +i F+   + L++  +h+y+F  v f     +p+ P++ ++ +   
     fk07692   589 DNG-SIAFY---DALNS--IHLYTFD-VAFA----QPVCPTFTVWNK--- 624  

                   geairlnfgqlp<-*
                      + +++ +lp   
     fk07692   625 ---CLTIITGLP    633  

PF00622.18.fs: domain 1 of 1, from 516 to 633: score 105.6, E = 9.5e-30
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      sG+hY+EV ++++++     ++G+a+ks+              +++ 
     fk07692   516    SGRHYWEVVISGSTW----YAIGLAYKSA--------------PKHE 544  

                   llGddegswgydgsggkkyhagesg.....epyglpfqekgdviGcflDy
                   ++G+++ sw++     ++++++++++++++e+  +p  +  +++G++lDy
     fk07692   545 WIGKNSASWAL-----CRCNNNWVVrhnskEIPIEPAPH-LRRVGILLDY 588  

                   eagVtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgg
                   ++g +i F+   + L++  +h+y+F  v f     +p+ P++ ++ +   
     fk07692   589 DNG-SIAFY---DALNS--IHLYTFD-VAFA----QPVCPTFTVWNK--- 624  

                   geairlnfgqlp<-*
                      + +++ +lp   
     fk07692   625 ---CLTIITGLP    633  

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