hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-05191872/chunk_1/iprscan-20080811-05191872.nocrc
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Query sequence: fk07858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF05729.3.fs NACHT domain                                 271.6    4.2e-80   1
PF05729.3.ls NACHT domain                                 273.5      4e-79   1
PF02758.6.fs PAAD/DAPIN/Pyrin domain                       53.6    4.6e-14   1
PF02758.6.ls PAAD/DAPIN/Pyrin domain                       55.6    1.5e-13   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF02758.6.fs   1/1      18   101 ..     1    83 []    53.6  4.6e-14
PF02758.6.ls   1/1      18   101 ..     1    83 []    55.6  1.5e-13
PF05729.3.fs   1/1     194   362 ..     1   205 []   271.6  4.2e-80
PF05729.3.ls   1/1     194   362 ..     1   205 []   273.5    4e-79

Alignments of top-scoring domains:
PF02758.6.fs: domain 1 of 1, from 18 to 101: score 53.6, E = 4.6e-14
                   *->krilLlkyLEeLndeeLkkFKslLk.tplekgdlkIpwgelekadri
                        + L+  LE+L+++eL+kFK l  +++l ++++kIp +e+ kad  
     fk07858    18    MGFNLQALLEQLSQDELSKFKYLITtFSLAHELQKIPHKEVDKADGK 64   

                   dlAdlLvekygedaAwdvtlkifekinlrdLaekLqr<-*
                   +l++ L ++  +++  +  l++fek++++dL e++++   
     fk07858    65 QLVEILTTHCDSYWVEMASLQVFEKMHRMDLSERAKD    101  

PF02758.6.ls: domain 1 of 1, from 18 to 101: score 55.6, E = 1.5e-13
                   *->krilLlkyLEeLndeeLkkFKslLk.tplekgdlkIpwgelekadri
                        + L+  LE+L+++eL+kFK l  +++l ++++kIp +e+ kad  
     fk07858    18    MGFNLQALLEQLSQDELSKFKYLITtFSLAHELQKIPHKEVDKADGK 64   

                   dlAdlLvekygedaAwdvtlkifekinlrdLaekLqr<-*
                   +l++ L ++  +++  +  l++fek++++dL e++++   
     fk07858    65 QLVEILTTHCDSYWVEMASLQVFEKMHRMDLSERAKD    101  

PF05729.3.fs: domain 1 of 1, from 194 to 362: score 271.6, E = 4.2e-80
                   *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr
                      +tv+l+G+AG GKTtL+qkl+l+Wa++ l ++ f+++F+lscrelsr
     fk07858   194    YTVVLYGPAGLGKTTLAQKLMLDWAEDNLIHK-FKYAFYLSCRELSR 239  

                   sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL
                    g++     s+a+l f++wpe+++++++             il++++++L
     fk07858   240 LGPC-----SFAELVFRDWPELQDDIPH-------------ILAQARKIL 271  

                   kSalllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLssLl
                               +++DG+DEl++++g++++++c+dw++++pv +LL+sLl
     fk07858   272 ------------FVIDGFDELGAAPGALIEDICGDWEKKKPVPVLLGSLL 309  

                   rkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrkey
                   ++++LP+a ll+T+RP+alrd  lr + eep   +y+ v+gF eedr++y
     fk07858   310 NRVMLPKAALLVTTRPRALRD--LRILAEEP---IYIRVEGFLEEDRRAY 354  

                   vrkyfsde<-*
                   ++++f de   
     fk07858   355 FLRHFGDE    362  

PF05729.3.ls: domain 1 of 1, from 194 to 362: score 273.5, E = 4e-79
                   *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr
                      +tv+l+G+AG GKTtL+qkl+l+Wa++ l ++ f+++F+lscrelsr
     fk07858   194    YTVVLYGPAGLGKTTLAQKLMLDWAEDNLIHK-FKYAFYLSCRELSR 239  

                   sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL
                    g++     s+a+l f++wpe+++++++             il++++++L
     fk07858   240 LGPC-----SFAELVFRDWPELQDDIPH-------------ILAQARKIL 271  

                   kSalllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLssLl
                               +++DG+DEl++++g++++++c+dw++++pv +LL+sLl
     fk07858   272 ------------FVIDGFDELGAAPGALIEDICGDWEKKKPVPVLLGSLL 309  

                   rkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrkey
                   ++++LP+a ll+T+RP+alrd  lr + eep   +y+ v+gF eedr++y
     fk07858   310 NRVMLPKAALLVTTRPRALRD--LRILAEEP---IYIRVEGFLEEDRRAY 354  

                   vrkyfsde<-*
                   ++++f de   
     fk07858   355 FLRHFGDE    362  

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