hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-05364112/chunk_1/iprscan-20080811-05364112.nocrc
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Query sequence: fk08328
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     68.6    1.8e-18   2
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     59.0    1.4e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2     138   216 ..     1    74 []    34.9  4.9e-09
PF00076.12.ls   1/2     138   216 ..     1    74 []    36.8  6.7e-08
PF00076.12.ls   2/2     285   347 ..     1    74 []    22.2   0.0012
PF00076.12.fs   2/2     291   347 ..    12    74 .]    33.7  1.1e-08

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 138 to 216: score 34.9, E = 4.9e-09
                   *->lfVgNLppdtteedLkdlFskfGpies........ikivrDttretg
                      ++V++Lppd+t ++  +l skfG i++++++++ ++k+ +D   + g
     fk08328   138    VYVSGLPPDITVDEFIQLMSKFGIIMRdpqteefkVKLYKD---NQG 181  

                   rskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                   + kG + + + + e++e Al+ l++ e++g +l+v   
     fk08328   182 NLKGDGLCCYLKRESVELALKLLDEDEIRGYKLHV    216  

PF00076.12.ls: domain 1 of 2, from 138 to 216: score 36.8, E = 6.7e-08
                   *->lfVgNLppdtteedLkdlFskfGpies........ikivrDttretg
                      ++V++Lppd+t ++  +l skfG i++++++++ ++k+ +D   + g
     fk08328   138    VYVSGLPPDITVDEFIQLMSKFGIIMRdpqteefkVKLYKD---NQG 181  

                   rskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                   + kG + + + + e++e Al+ l++ e++g +l+v   
     fk08328   182 NLKGDGLCCYLKRESVELALKLLDEDEIRGYKLHV    216  

PF00076.12.ls: domain 2 of 2, from 285 to 347: score 22.2, E = 0.0012
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l    +     +edL+   skfG+i    ++         + G+a V
     fk08328   285    LVLNEI-----REDLRVECSKFGQIRKLLLFDR------HPDGVASV 320  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F d+e+A+ ++++l+G+ +ggr ++    
     fk08328   321 SFRDPEEADYCIQTLDGRWFGGRQITA    347  

PF00076.12.fs: domain 2 of 2, from 291 to 347: score 33.7, E = 1.1e-08
                   *->eedLkdlFskfGpiesikivrDttretgrskGfaFVeFedeedAekA
                      +edL+   skfG+i    ++         + G+a V F d+e+A+ +
     fk08328   291    REDLRVECSKFGQIRKLLLFDR------HPDGVASVSFRDPEEADYC 331  

                   ldalnGkelggrelrv<-*
                   +++l+G+ +ggr ++    
     fk08328   332 IQTLDGRWFGGRQITA    347  

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