hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-05364112/chunk_1/iprscan-20080811-05364112.nocrc
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Query sequence: fk08328
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  73.7    2.3e-17   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2     137   217 ..     1   121 []    43.1  3.8e-08
SM00360    2/2     268   348 ..     1   121 []    30.6  0.00021

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 137 to 217: score 43.1, E = 3.8e-08
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +++V++L  ppd+t ++  +l               skfG +    i
     fk08328   137    NVYVSGL--PPDITVDEFIQLM--------------SKFG-I----I 162  

                   vrdkdnilirressl.eqkvql.gkdsgTGkskGfaFVeFedeedAekAl
                   +rd++          +e+kv+l + ++  G  kG +   +  +e++e A 
     fk08328   163 MRDPQ---------TeEFKVKLyKDNQ--GNLKGDGLCCYLKRESVELA- 200  

                   liealnaskGkeledgGrptlglrVe<-*
                    +++l+     e+   G +   l+Ve   
     fk08328   201 -LKLLD---EDEI--RGYK---LHVE    217  

SM00360: domain 2 of 2, from 268 to 348: score 30.6, E = 0.00021
                   *->tlfVgNLn.......dppdvte..edLrelFkevksvevfraetesk
                      +++++N  ++ + ++dp   +e +edLr  +              sk
     fk08328   268    VVIIKNMFhpmdfedDPLVLNEirEDLRVEC--------------SK 300  

                   fGkvvsvrivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFede
                   fG +++  ++                          + + G a V F+d+
     fk08328   301 FGQIRKLLLFD-------------------------RHPDGVASVSFRDP 325  

                   edAekAlliealnaskGkeledgGrptlglrVe<-*
                   e+A+ +  i+ l+   G+++  gGr+   ++ +   
     fk08328   326 EEADYC--IQTLD---GRWF--GGRQ---ITAQ    348  

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