# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk08386.fasta.nr -Q fk08386.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk08386, 407 aa vs /cdna2/lib/nr/nr library 3020366983 residues in 8842601 sequences statistics sampled from 60000 to 8797193 sequences Expectation_n fit: rho(ln(x))= 5.9747+/-0.000204; mu= 7.5255+/- 0.011 mean_var=127.7898+/-24.673, 0's: 36 Z-trim: 197 B-trim: 364 in 2/64 Lambda= 0.113456 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8842601) gi|149274531|ref|XP_001473875.1| PREDICTED: simila ( 814) 2617 439.7 1.2e-120 gi|114612830|ref|XP_519003.2| PREDICTED: similar t ( 614) 2423 407.9 3.7e-111 gi|122145945|sp|Q2HJ60.1|ROA2_BOVIN RecName: Full= ( 341) 2416 406.4 5.5e-111 gi|21071091|gb|AAK98601.2| heterogeneous nuclear r ( 341) 2410 405.5 1.1e-110 gi|157059859|dbj|BAF79675.1| heterogeneous nuclear ( 341) 2410 405.5 1.1e-110 gi|3329498|gb|AAC26867.1| heterogenous nuclear rib ( 341) 2409 405.3 1.2e-110 gi|126341861|ref|XP_001368260.1| PREDICTED: simila ( 398) 2409 405.4 1.3e-110 gi|219519440|gb|AAI45589.1| Heterogeneous nuclear ( 341) 2405 404.6 1.9e-110 gi|75074832|sp|Q9TTV2.1|ROA2_SAGOE RecName: Full=H ( 341) 2405 404.6 1.9e-110 gi|133257|sp|P22626.2|ROA2_HUMAN RecName: Full=Het ( 353) 2404 404.5 2.2e-110 gi|224493240|sp|A7VJC2.1|ROA2_RAT RecName: Full=He ( 353) 2398 403.5 4.3e-110 gi|75070806|sp|Q5RBU8.1|ROA2_PONAB RecName: Full=H ( 353) 2398 403.5 4.3e-110 gi|124028629|sp|O88569.2|ROA2_MOUSE RecName: Full= ( 353) 2398 403.5 4.3e-110 gi|158259881|dbj|BAF82118.1| unnamed protein produ ( 353) 2396 403.2 5.4e-110 gi|53127438|emb|CAG31102.1| hypothetical protein [ ( 349) 2388 401.9 1.3e-109 gi|149634029|ref|XP_001510026.1| PREDICTED: simila ( 344) 2386 401.5 1.7e-109 gi|119614244|gb|EAW93838.1| heterogeneous nuclear ( 301) 2147 362.3 9.1e-98 gi|76780030|gb|AAI06633.1| MGC52881 protein [Xenop ( 346) 2121 358.2 1.9e-96 gi|134024345|gb|AAI35351.1| Hnrpa2b1 protein [Xeno ( 349) 2116 357.3 3.4e-96 gi|1710623|sp|P51989.1|RO21_XENLA RecName: Full=He ( 346) 2113 356.8 4.7e-96 gi|28302301|gb|AAH46692.1| Hnrpa2b1 protein [Xenop ( 346) 2113 356.8 4.7e-96 gi|73976128|ref|XP_864337.1| PREDICTED: similar to ( 353) 2066 349.2 9.9e-94 gi|148666221|gb|EDK98637.1| mCG119114, isoform CRA ( 357) 1953 330.7 3.7e-88 gi|73976132|ref|XP_864379.1| PREDICTED: similar to ( 352) 1897 321.5 2.1e-85 gi|73976130|ref|XP_864360.1| PREDICTED: similar to ( 353) 1877 318.2 2e-84 gi|73976122|ref|XP_864274.1| PREDICTED: similar to ( 363) 1847 313.3 6.2e-83 gi|73976126|ref|XP_864315.1| PREDICTED: similar to ( 328) 1781 302.5 1e-79 gi|119614240|gb|EAW93834.1| heterogeneous nuclear ( 301) 1746 296.7 5.2e-78 gi|26354140|dbj|BAC40700.1| unnamed protein produc ( 301) 1740 295.7 1e-77 gi|157059863|dbj|BAF79677.1| heterogeneous nuclear ( 301) 1740 295.7 1e-77 gi|157059865|dbj|BAF79678.1| heterogeneous nuclear ( 313) 1728 293.8 4.1e-77 gi|74209393|dbj|BAE23274.1| unnamed protein produc ( 301) 1713 291.3 2.2e-76 gi|1710624|sp|P51990.1|RO22_XENLA RecName: Full=He ( 358) 1707 290.4 4.9e-76 gi|76622153|ref|XP_594772.2| PREDICTED: similar to ( 352) 1706 290.2 5.4e-76 gi|89269835|emb|CAJ82537.1| heterogeneous nuclear ( 327) 1699 289.1 1.1e-75 gi|224045278|ref|XP_002192177.1| PREDICTED: hetero ( 310) 1634 278.4 1.8e-72 gi|90083957|dbj|BAE90929.1| unnamed protein produc ( 317) 1624 276.8 5.5e-72 gi|74004706|ref|XP_862128.1| PREDICTED: similar to ( 367) 1624 276.8 6.1e-72 gi|74004704|ref|XP_862103.1| PREDICTED: similar to ( 365) 1598 272.6 1.2e-70 gi|119894797|ref|XP_580324.3| PREDICTED: similar t ( 372) 1584 270.3 5.8e-70 gi|194665023|ref|XP_001254238.2| PREDICTED: simila ( 361) 1561 266.5 7.7e-69 gi|94482853|gb|ABF22468.1| heterogeneous nuclear r ( 341) 1545 263.9 4.5e-68 gi|73976120|ref|XP_864250.1| PREDICTED: similar to ( 307) 1526 260.7 3.6e-67 gi|82801284|ref|XP_902725.1| PREDICTED: similar to ( 372) 1524 260.5 5.2e-67 gi|73976114|ref|XP_864174.1| PREDICTED: similar to ( 303) 1521 259.9 6.4e-67 gi|94371439|ref|XP_993338.1| PREDICTED: similar to ( 350) 1521 260.0 7e-67 gi|55727504|emb|CAH90507.1| hypothetical protein [ ( 355) 1521 260.0 7.1e-67 gi|73976112|ref|XP_851669.1| PREDICTED: similar to ( 301) 1516 259.1 1.1e-66 gi|149268214|ref|XP_001004764.2| PREDICTED: simila ( 333) 1513 258.6 1.7e-66 gi|187956922|gb|AAI58075.1| EG627828 protein [Mus ( 351) 1507 257.7 3.4e-66 >>gi|149274531|ref|XP_001473875.1| PREDICTED: similar to (814 aa) initn: 2617 init1: 2617 opt: 2617 Z-score: 2322.9 bits: 439.7 E(): 1.2e-120 Smith-Waterman score: 2617; 94.710% identity (96.725% similar) in 397 aa overlap (11-407:418-814) 10 20 30 40 fk0838 RKAAAAALAAVAAAPGPVRRCSSQSCFSSSGSSHYSARTS .:::: : . : . . : .:.::: gi|149 SMVQPGHSSDRNIIQPVHTSAWSIDEPGHTIAAAPVPCAGAPLRPSFLAIACSPHSVRTS 390 400 410 420 430 440 50 60 70 80 90 100 fk0838 PVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGK :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PVRVRPRRSFSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGK 450 460 470 480 490 500 110 120 130 140 150 160 fk0838 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG 510 520 530 540 550 560 170 180 190 200 210 220 fk0838 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV 570 580 590 600 610 620 230 240 250 260 270 280 fk0838 DKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSN 630 640 650 660 670 680 290 300 310 320 330 340 fk0838 FRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG 690 700 710 720 730 740 350 360 370 380 390 400 fk0838 YDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGG ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|149 YDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGG 750 760 770 780 790 800 fk0838 YGGRSRY ::::::: gi|149 YGGRSRY 810 >>gi|114612830|ref|XP_519003.2| PREDICTED: similar to He (614 aa) initn: 2404 init1: 2404 opt: 2423 Z-score: 2152.8 bits: 407.9 E(): 3.7e-111 Smith-Waterman score: 2795; 97.136% identity (97.136% similar) in 419 aa overlap (1-407:196-614) 10 20 30 fk0838 RKAAAAALAAVAAAPGPVRRCSSQSCFSSS :::::::::::::::::::::::::::::: gi|114 GRRAFPPLAADRAFTRRPDVRKTRQWGEGSRKAAAAALAAVAAAPGPVRRCSSQSCFSSS 170 180 190 200 210 220 40 50 60 70 fk0838 GSSHYSARTSPVRVRPRRSLSSRSAAGNRAEATESAME------------REKEQFRKLF :::::::::::::::::::::::::::::::::::::: :::::::::: gi|114 GSSHYSARTSPVRVRPRRSLSSRSAAGNRAEATESAMEKTLETVPLERKKREKEQFRKLF 230 240 250 260 270 280 80 90 100 110 120 130 fk0838 IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH 290 300 310 320 330 340 140 150 160 170 180 190 fk0838 SIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEII 350 360 370 380 390 400 200 210 220 230 240 250 fk0838 TDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRG 410 420 430 440 450 460 260 270 280 290 300 310 fk0838 GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGG 470 480 490 500 510 520 320 330 340 350 360 370 fk0838 GRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGS 530 540 550 560 570 580 380 390 400 fk0838 RNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::: gi|114 RNMGGPYGGGNYGPGGSGGSGGYGGRSRY 590 600 610 >>gi|122145945|sp|Q2HJ60.1|ROA2_BOVIN RecName: Full=Hete (341 aa) initn: 2416 init1: 2416 opt: 2416 Z-score: 2149.7 bits: 406.4 E(): 5.5e-111 Smith-Waterman score: 2416; 100.000% identity (100.000% similar) in 341 aa overlap (67-407:1-341) 40 50 60 70 80 90 fk0838 ARTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYE :::::::::::::::::::::::::::::: gi|122 MEREKEQFRKLFIGGLSFETTEESLRNYYE 10 20 30 100 110 120 130 140 150 fk0838 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 40 50 60 70 80 90 160 170 180 190 200 210 fk0838 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 100 110 120 130 140 150 220 230 240 250 260 270 fk0838 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 160 170 180 190 200 210 280 290 300 310 320 330 fk0838 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 220 230 240 250 260 270 340 350 360 370 380 390 fk0838 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG 280 290 300 310 320 330 400 fk0838 GSGGYGGRSRY ::::::::::: gi|122 GSGGYGGRSRY 340 >>gi|21071091|gb|AAK98601.2| heterogeneous nuclear ribon (341 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2144.4 bits: 405.5 E(): 1.1e-110 Smith-Waterman score: 2410; 99.707% identity (100.000% similar) in 341 aa overlap (67-407:1-341) 40 50 60 70 80 90 fk0838 ARTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYE :::::::::::::::::::::::::::::: gi|210 MEREKEQFRKLFIGGLSFETTEESLRNYYE 10 20 30 100 110 120 130 140 150 fk0838 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|210 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 40 50 60 70 80 90 160 170 180 190 200 210 fk0838 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|210 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 100 110 120 130 140 150 220 230 240 250 260 270 fk0838 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|210 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 160 170 180 190 200 210 280 290 300 310 320 330 fk0838 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|210 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 220 230 240 250 260 270 340 350 360 370 380 390 fk0838 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|210 YGGGYDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG 280 290 300 310 320 330 400 fk0838 GSGGYGGRSRY ::::::::::: gi|210 GSGGYGGRSRY 340 >>gi|157059859|dbj|BAF79675.1| heterogeneous nuclear rib (341 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2144.4 bits: 405.5 E(): 1.1e-110 Smith-Waterman score: 2410; 99.707% identity (99.707% similar) in 341 aa overlap (67-407:1-341) 40 50 60 70 80 90 fk0838 ARTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYE :::::::::::::::::::::::::::::: gi|157 MEREKEQFRKLFIGGLSFETTEESLRNYYE 10 20 30 100 110 120 130 140 150 fk0838 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 40 50 60 70 80 90 160 170 180 190 200 210 fk0838 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 100 110 120 130 140 150 220 230 240 250 260 270 fk0838 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 HDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 160 170 180 190 200 210 280 290 300 310 320 330 fk0838 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 220 230 240 250 260 270 340 350 360 370 380 390 fk0838 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG 280 290 300 310 320 330 400 fk0838 GSGGYGGRSRY ::::::::::: gi|157 GSGGYGGRSRY 340 >>gi|3329498|gb|AAC26867.1| heterogenous nuclear ribonuc (341 aa) initn: 2409 init1: 2409 opt: 2409 Z-score: 2143.5 bits: 405.3 E(): 1.2e-110 Smith-Waterman score: 2409; 99.707% identity (100.000% similar) in 341 aa overlap (67-407:1-341) 40 50 60 70 80 90 fk0838 ARTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYE :::::::::::::::::::::::::::::: gi|332 MEREKEQFRKLFIGGLSFETTEESLRNYYE 10 20 30 100 110 120 130 140 150 fk0838 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 40 50 60 70 80 90 160 170 180 190 200 210 fk0838 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 100 110 120 130 140 150 220 230 240 250 260 270 fk0838 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 160 170 180 190 200 210 280 290 300 310 320 330 fk0838 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 220 230 240 250 260 270 340 350 360 370 380 390 fk0838 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|332 YGGGYDNYGGGNYGSGTYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG 280 290 300 310 320 330 400 fk0838 GSGGYGGRSRY ::::::::::: gi|332 GSGGYGGRSRY 340 >>gi|126341861|ref|XP_001368260.1| PREDICTED: similar to (398 aa) initn: 2403 init1: 2403 opt: 2409 Z-score: 2142.7 bits: 405.4 E(): 1.3e-110 Smith-Waterman score: 2409; 93.733% identity (96.458% similar) in 367 aa overlap (43-407:32-398) 20 30 40 50 60 70 fk0838 AAPGPVRRCSSQSCFSSSGSSHYSARTSPVRVRPRR--SLSSRSAAGNRAEATESAMERE .: :.. .:. :: :. . . .:: gi|126 PQLELPGYWSCSDPTNPVKLKNLATENWLAKVTPEKEAKLAPRSCPFFMADHVALVEHRE 10 20 30 40 50 60 80 90 100 110 120 130 fk0838 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 70 80 90 100 110 120 140 150 160 170 180 190 fk0838 AAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AAMSARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 130 140 150 160 170 180 200 210 220 230 240 250 fk0838 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV 190 200 210 220 230 240 260 270 280 290 300 310 fk0838 QSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 QSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNF 250 260 270 280 290 300 320 330 340 350 360 370 fk0838 GGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 GGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPM 310 320 330 340 350 360 380 390 400 fk0838 KSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::::::::::: gi|126 KSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 370 380 390 >>gi|219519440|gb|AAI45589.1| Heterogeneous nuclear ribo (341 aa) initn: 2405 init1: 2405 opt: 2405 Z-score: 2140.0 bits: 404.6 E(): 1.9e-110 Smith-Waterman score: 2405; 99.413% identity (100.000% similar) in 341 aa overlap (67-407:1-341) 40 50 60 70 80 90 fk0838 ARTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYE :::::::::::::::::::::::::::::: gi|219 MEREKEQFRKLFIGGLSFETTEESLRNYYE 10 20 30 100 110 120 130 140 150 fk0838 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|219 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDGAMAARPHSIDGRVVEPKRAVAREES 40 50 60 70 80 90 160 170 180 190 200 210 fk0838 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 100 110 120 130 140 150 220 230 240 250 260 270 fk0838 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 160 170 180 190 200 210 280 290 300 310 320 330 fk0838 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 220 230 240 250 260 270 340 350 360 370 380 390 fk0838 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|219 YGGGYDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG 280 290 300 310 320 330 400 fk0838 GSGGYGGRSRY ::::::::::: gi|219 GSGGYGGRSRY 340 >>gi|75074832|sp|Q9TTV2.1|ROA2_SAGOE RecName: Full=Heter (341 aa) initn: 2405 init1: 2405 opt: 2405 Z-score: 2140.0 bits: 404.6 E(): 1.9e-110 Smith-Waterman score: 2405; 99.413% identity (99.707% similar) in 341 aa overlap (67-407:1-341) 40 50 60 70 80 90 fk0838 ARTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYE ::::::::::::::::::.::::::::::: gi|750 MEREKEQFRKLFIGGLSFQTTEESLRNYYE 10 20 30 100 110 120 130 140 150 fk0838 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 40 50 60 70 80 90 160 170 180 190 200 210 fk0838 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|750 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDD 100 110 120 130 140 150 220 230 240 250 260 270 fk0838 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 160 170 180 190 200 210 280 290 300 310 320 330 fk0838 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 220 230 240 250 260 270 340 350 360 370 380 390 fk0838 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSG 280 290 300 310 320 330 400 fk0838 GSGGYGGRSRY ::::::::::: gi|750 GSGGYGGRSRY 340 >>gi|133257|sp|P22626.2|ROA2_HUMAN RecName: Full=Heterog (353 aa) initn: 2404 init1: 2404 opt: 2404 Z-score: 2138.9 bits: 404.5 E(): 2.2e-110 Smith-Waterman score: 2404; 99.706% identity (100.000% similar) in 340 aa overlap (68-407:14-353) 40 50 60 70 80 90 fk0838 RTSPVRVRPRRSLSSRSAAGNRAEATESAMEREKEQFRKLFIGGLSFETTEESLRNYYEQ .::::::::::::::::::::::::::::: gi|133 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQ 10 20 30 40 100 110 120 130 140 150 fk0838 WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG 50 60 70 80 90 100 160 170 180 190 200 210 fk0838 KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDH 110 120 130 140 150 160 220 230 240 250 260 270 fk0838 DPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 DPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGP 170 180 190 200 210 220 280 290 300 310 320 330 fk0838 GSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 GSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 230 240 250 260 270 280 340 350 360 370 380 390 fk0838 GGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 GGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGG 290 300 310 320 330 340 400 fk0838 SGGYGGRSRY :::::::::: gi|133 SGGYGGRSRY 350 407 residues in 1 query sequences 3020366983 residues in 8842601 library sequences Tcomplib [34.26] (8 proc) start: Mon May 25 15:30:24 2009 done: Mon May 25 15:33:34 2009 Total Scan time: 1053.240 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]