hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-15333550/chunk_1/iprscan-20090525-15333550.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk08386 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or 161.6 1.9e-45 2 PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or 157.7 2.8e-44 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00076.12.fs 1/2 77 147 .. 1 74 [] 76.5 1.1e-20 PF00076.12.ls 1/2 77 147 .. 1 74 [] 78.4 2.1e-20 PF00076.12.fs 2/2 168 238 .. 1 74 [] 81.3 5e-22 PF00076.12.ls 2/2 168 238 .. 1 74 [] 83.2 7.5e-22 Alignments of top-scoring domains: PF00076.12.fs: domain 1 of 2, from 77 to 147: score 76.5, E = 1.1e-20 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV lf+g+L+++ttee L+ + ++ G+ +++ ++rD ++ +rs+Gf+FV fk08386 77 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD--PASKRSRGFGFV 121 eFedeedAekAldalnGkelggrelrv<-* +F + ++++A++ + ++gr+++ fk08386 122 TFSSMAEVDAAMA-ARPHSIDGRVVEP 147 PF00076.12.ls: domain 1 of 2, from 77 to 147: score 78.4, E = 2.1e-20 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV lf+g+L+++ttee L+ + ++ G+ +++ ++rD ++ +rs+Gf+FV fk08386 77 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD--PASKRSRGFGFV 121 eFedeedAekAldalnGkelggrelrv<-* +F + ++++A++ + ++gr+++ fk08386 122 TFSSMAEVDAAMA-ARPHSIDGRVVEP 147 PF00076.12.fs: domain 2 of 2, from 168 to 238: score 81.3, E = 5e-22 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV lfVg++ +dt e+ L+d+F+++G+i i+i++D r+ g+ +Gf+FV fk08386 168 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD--RQSGKKRGFGFV 212 eFedeedAekAldalnGkelggrelrv<-* +F+d++ ++k + ++++g++ +v fk08386 213 TFDDHDPVDKIVL-QKYHTINGHNAEV 238 PF00076.12.ls: domain 2 of 2, from 168 to 238: score 83.2, E = 7.5e-22 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV lfVg++ +dt e+ L+d+F+++G+i i+i++D r+ g+ +Gf+FV fk08386 168 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD--RQSGKKRGFGFV 212 eFedeedAekAldalnGkelggrelrv<-* +F+d++ ++k + ++++g++ +v fk08386 213 TFDDHDPVDKIVL-QKYHTINGHNAEV 238 //