# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk08867.fasta.nr -Q fk08867.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk08867, 742 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842480 sequences Expectation_n fit: rho(ln(x))= 5.4591+/-0.000186; mu= 12.1039+/- 0.010 mean_var=81.1320+/-15.750, 0's: 32 Z-trim: 35 B-trim: 78 in 1/64 Lambda= 0.142390 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|114661526|ref|XP_511201.2| PREDICTED: hypotheti ( 793) 4776 991.1 0 gi|29428028|sp|Q9NVU0|RPC5_HUMAN DNA-directed RNA ( 708) 4721 979.8 0 gi|24429619|gb|AAM18215.1| RNA polymerase III 80 k ( 708) 4717 979.0 0 gi|62897137|dbj|BAD96509.1| polymerase (RNA) III ( ( 708) 4715 978.6 0 gi|119570992|gb|EAW50607.1| polymerase (RNA) III ( ( 709) 4677 970.8 0 gi|149758536|ref|XP_001494107.1| PREDICTED: simila ( 711) 4526 939.7 0 gi|10435073|dbj|BAB14481.1| unnamed protein produc ( 672) 4489 932.1 0 gi|194384452|dbj|BAG59386.1| unnamed protein produ ( 672) 4410 915.9 0 gi|29427993|sp|Q9CZT4|RPC5_MOUSE DNA-directed RNA ( 710) 4362 906.1 0 gi|74198301|dbj|BAE35318.1| unnamed protein produc ( 710) 4358 905.2 0 gi|74226782|dbj|BAE27037.1| unnamed protein produc ( 710) 4357 905.0 0 gi|12848773|dbj|BAB28084.1| unnamed protein produc ( 710) 4353 904.2 0 gi|149068046|gb|EDM17598.1| polymerase (RNA) III ( ( 708) 4341 901.7 0 gi|194374587|dbj|BAG62408.1| unnamed protein produ ( 687) 4313 896.0 0 gi|12653043|gb|AAH00285.1| POLR3E protein [Homo sa ( 666) 4312 895.8 0 gi|10434958|dbj|BAB14437.1| unnamed protein produc ( 666) 4301 893.5 0 gi|149758540|ref|XP_001494155.1| PREDICTED: simila ( 675) 4294 892.1 0 gi|109127866|ref|XP_001086444.1| PREDICTED: polyme ( 913) 4290 891.3 0 gi|194373451|dbj|BAG56821.1| unnamed protein produ ( 652) 4258 884.7 0 gi|126334136|ref|XP_001366919.1| PREDICTED: simila ( 709) 4205 873.8 0 gi|119570991|gb|EAW50606.1| polymerase (RNA) III ( ( 654) 4128 858.0 0 gi|149758538|ref|XP_001494127.1| PREDICTED: simila ( 669) 4117 855.7 0 gi|149636800|ref|XP_001507137.1| PREDICTED: simila ( 701) 4106 853.5 0 gi|12836675|dbj|BAB23761.1| unnamed protein produc ( 684) 4004 832.5 0 gi|148685286|gb|EDL17233.1| polymerase (RNA) III ( ( 689) 4004 832.5 0 gi|148685287|gb|EDL17234.1| polymerase (RNA) III ( ( 612) 3581 745.6 1.1e-212 gi|47937486|gb|AAH72054.1| MGC78924 protein [Xenop ( 701) 3375 703.3 6.9e-200 gi|73958771|ref|XP_850881.1| PREDICTED: similar to ( 880) 3223 672.1 2.1e-190 gi|89271928|emb|CAJ83703.1| novel protein similar ( 697) 2902 606.1 1.2e-170 gi|29124510|gb|AAH48877.1| Polymerase (RNA) III (D ( 696) 2448 512.9 1.4e-142 gi|51703365|gb|AAH80898.1| Polr3e protein [Xenopus ( 547) 2437 510.5 5.8e-142 gi|194678592|ref|XP_001787772.1| PREDICTED: simila ( 800) 2129 447.4 8.6e-123 gi|84579167|dbj|BAE73017.1| hypothetical protein [ ( 269) 1743 367.7 2.7e-99 gi|118098048|ref|XP_414921.2| PREDICTED: similar t ( 318) 1705 360.0 7e-97 gi|115686183|ref|XP_781588.2| PREDICTED: similar t ( 996) 1379 293.4 2.4e-76 gi|110762464|ref|XP_397129.3| PREDICTED: similar t ( 499) 1240 264.6 5.6e-68 gi|156553488|ref|XP_001600399.1| PREDICTED: simila ( 510) 1134 242.8 2.1e-61 gi|47206568|emb|CAF91799.1| unnamed protein produc ( 750) 1086 233.1 2.6e-58 gi|167866165|gb|EDS29548.1| DNA-directed RNA polym ( 462) 1068 229.2 2.3e-57 gi|167864598|gb|EDS27981.1| DNA-directed RNA polym ( 462) 1064 228.4 4.1e-57 gi|108871965|gb|EAT36190.1| conserved hypothetical ( 461) 1038 223.1 1.6e-55 gi|91089167|ref|XP_974028.1| PREDICTED: similar to ( 492) 923 199.5 2.2e-48 gi|157015829|gb|EAA11915.3| AGAP005922-PA [Anophel ( 474) 913 197.4 9e-48 gi|54641964|gb|EAL30713.1| GA10413-PA [Drosophila ( 469) 896 193.9 1e-46 gi|115620425|ref|XP_786567.2| PREDICTED: hypotheti ( 288) 832 180.6 6.2e-43 gi|193920766|gb|EDW19633.1| GI13892 [Drosophila mo ( 480) 723 158.4 5.1e-36 gi|194154918|gb|EDW70102.1| GJ11746 [Drosophila vi ( 480) 711 155.9 2.8e-35 gi|194164406|gb|EDW79307.1| GK25406 [Drosophila wi ( 482) 699 153.5 1.6e-34 gi|193898811|gb|EDV97677.1| GH14565 [Drosophila gr ( 483) 688 151.2 7.5e-34 gi|194197745|gb|EDX11321.1| GD14927 [Drosophila si ( 486) 634 140.1 1.6e-30 >>gi|114661526|ref|XP_511201.2| PREDICTED: hypothetical (793 aa) initn: 3919 init1: 2577 opt: 4776 Z-score: 5298.4 bits: 991.1 E(): 0 Smith-Waterman score: 4776; 96.909% identity (98.118% similar) in 744 aa overlap (1-742:53-793) 10 20 30 fk0886 PSLQPAGNWAVAAVRARPPRRDRAEGLRGW : :::::::::::::::::::::::::::: gi|114 RWGRPAPPHVSAGVSPPATWPPPERRAGPPPPLQPAGNWAVAAVRARPPRRDRAEGLRGW 30 40 50 60 70 80 40 50 60 70 80 90 fk0886 LSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKV 90 100 110 120 130 140 100 110 120 130 140 150 fk0886 ELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAA 150 160 170 180 190 200 160 170 180 190 200 210 fk0886 ALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVR 210 220 230 240 250 260 220 230 240 250 260 270 fk0886 FSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENT 270 280 290 300 310 320 280 290 300 310 320 330 fk0886 ELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFAN 330 340 350 360 370 380 340 350 360 370 380 390 fk0886 LMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFV 390 400 410 420 430 440 400 410 420 430 440 fk0886 MWKF--TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPD . . .::: :. :....:::::::::::::::::::::::::::::::::::::: gi|114 VSTLGSLDSRWGRGKRGAALSRLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPD 450 460 470 480 490 500 450 460 470 480 490 500 fk0886 VVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHAL ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|114 VVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVSGDQRIQVAKTKAQQNHAL 510 520 530 540 550 560 510 520 530 540 550 560 fk0886 LERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGL :::::::::::::::::::::::::::::: ::::::.:::::::::::::::::::: gi|114 LERELQRRKEQLRVPAVPPGVRIKEEPVSE---EDEEQEVEEEPMDTSPSGLHSKLANGL 570 580 590 600 610 570 580 590 600 610 620 fk0886 PLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPP 620 630 640 650 660 670 630 640 650 660 670 680 fk0886 GHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLL 680 690 700 710 720 730 690 700 710 720 730 740 fk0886 EIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 740 750 760 770 780 790 >>gi|29428028|sp|Q9NVU0|RPC5_HUMAN DNA-directed RNA poly (708 aa) initn: 4721 init1: 4721 opt: 4721 Z-score: 5238.1 bits: 979.8 E(): 0 Smith-Waterman score: 4721; 100.000% identity (100.000% similar) in 708 aa overlap (35-742:1-708) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::::::::::::::::::::::: gi|294 MANEEDDPVVQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 EQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATF 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 QRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 QRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLK 640 650 660 670 680 690 730 740 fk0886 DCCVSYGGMWYLKGTVQS :::::::::::::::::: gi|294 DCCVSYGGMWYLKGTVQS 700 >>gi|24429619|gb|AAM18215.1| RNA polymerase III 80 kDa s (708 aa) initn: 4717 init1: 4717 opt: 4717 Z-score: 5233.6 bits: 979.0 E(): 0 Smith-Waterman score: 4717; 99.859% identity (100.000% similar) in 708 aa overlap (35-742:1-708) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::::::::::::::::::::::: gi|244 MANEEDDPVVQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|244 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQQVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 EQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATF 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 QRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 QRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLK 640 650 660 670 680 690 730 740 fk0886 DCCVSYGGMWYLKGTVQS :::::::::::::::::: gi|244 DCCVSYGGMWYLKGTVQS 700 >>gi|62897137|dbj|BAD96509.1| polymerase (RNA) III (DNA (708 aa) initn: 4715 init1: 4715 opt: 4715 Z-score: 5231.4 bits: 978.6 E(): 0 Smith-Waterman score: 4715; 99.859% identity (99.859% similar) in 708 aa overlap (35-742:1-708) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::::::::::::::::::::::: gi|628 MANEEDDPVVQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|628 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPRFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 EQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATF 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 QRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 QRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAAS 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLK 640 650 660 670 680 690 730 740 fk0886 DCCVSYGGMWYLKGTVQS :::::::::::::::::: gi|628 DCCVSYGGMWYLKGTVQS 700 >>gi|119570992|gb|EAW50607.1| polymerase (RNA) III (DNA (709 aa) initn: 4679 init1: 2479 opt: 4677 Z-score: 5189.2 bits: 970.8 E(): 0 Smith-Waterman score: 4677; 99.295% identity (99.577% similar) in 709 aa overlap (35-742:1-709) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::::::::::::::::::::::: gi|119 MANEEDDPVVQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAE-DVKDFLEHM ::::::::::::::::::::::::::::::::::::::::::::::. . ::::::::: gi|119 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKVSGVFDVKDFLEHM 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 AVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQS 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 GPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEED 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEAT 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 FQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAA 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 SPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVL 640 650 660 670 680 690 730 740 fk0886 KDCCVSYGGMWYLKGTVQS ::::::::::::::::::: gi|119 KDCCVSYGGMWYLKGTVQS 700 >>gi|149758536|ref|XP_001494107.1| PREDICTED: similar to (711 aa) initn: 3287 init1: 3287 opt: 4526 Z-score: 5021.6 bits: 939.7 E(): 0 Smith-Waterman score: 4526; 96.062% identity (98.172% similar) in 711 aa overlap (35-742:1-711) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::::::::::::::::::::::: gi|149 MANEEDDPVVQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|149 EREAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM ::::::::::::::::: :::::::::::::::::::::::::::.:::::::::::::: gi|149 YGLRDSRSEHERQYLLCQGSSGVENTELVKSPSEYLMMLMPPSQEQEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|149 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPFIDSVAVLRGIQKVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|149 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLSAEDVKDFLEHMA 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|149 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDGQSG 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE :: :: ::::.::::.:::::::::::::::::::.:. .: :::::::::.::::::.: gi|149 PAVLVSGDQRVQVAKSKAQQNHALLERELQRRKEQIRASTVLPGVRIKEEPMSEEGEEEE 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EQEAEE--EPMDTSPS-GLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVE :.:.:: :::::::: :::..:::::: ::::: :::::::: :::::::::::.:::: gi|149 EREVEEDEEPMDTSPSRGLHNRLANGLPAGRAAGGDSFNGHPPPGCASTPVARELRAFVE 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 ATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQT 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 AASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDK 640 650 660 670 680 690 730 740 fk0886 VLKDCCVSYGGMWYLKGTVQS ::::::::::::::::::::: gi|149 VLKDCCVSYGGMWYLKGTVQS 700 710 >>gi|10435073|dbj|BAB14481.1| unnamed protein product [H (672 aa) initn: 4489 init1: 4489 opt: 4489 Z-score: 4980.8 bits: 932.1 E(): 0 Smith-Waterman score: 4489; 100.000% identity (100.000% similar) in 672 aa overlap (71-742:1-672) 50 60 70 80 90 100 fk0886 DPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLN :::::::::::::::::::::::::::::: gi|104 MTYDDIPHLSAKIKPKQQKVELEMAIDTLN 10 20 30 110 120 130 140 150 160 fk0886 PNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHL 40 50 60 70 80 90 170 180 190 200 210 220 fk0886 TPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 TPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQAR 100 110 120 130 140 150 230 240 250 260 270 280 fk0886 QRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 QRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYL 160 170 180 190 200 210 290 300 310 320 330 340 fk0886 MMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 MMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSID 220 230 240 250 260 270 350 360 370 380 390 400 fk0886 SVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 SVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWV 280 290 300 310 320 330 410 420 430 440 450 460 fk0886 VRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 VRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGI 340 350 360 370 380 390 470 480 490 500 510 520 fk0886 QAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 QAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQL 400 410 420 430 440 450 530 540 550 560 570 580 fk0886 RVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 RVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFN 460 470 480 490 500 510 590 600 610 620 630 640 fk0886 GHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 GHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRM 520 530 540 550 560 570 650 660 670 680 690 700 fk0886 LQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 LQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRN 580 590 600 610 620 630 710 720 730 740 fk0886 MIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS :::::::::::::::::::::::::::::::::::::::::: gi|104 MIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 640 650 660 670 >>gi|194384452|dbj|BAG59386.1| unnamed protein product [ (672 aa) initn: 4408 init1: 4408 opt: 4410 Z-score: 4893.1 bits: 915.9 E(): 0 Smith-Waterman score: 4410; 98.954% identity (99.402% similar) in 669 aa overlap (74-742:5-672) 50 60 70 80 90 100 fk0886 VQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNY .: : . .::::::::::::::::::::: gi|194 MANEEDDP-VVQEIKPKQQKVELEMAIDTLNPNY 10 20 30 110 120 130 140 150 160 fk0886 CRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 CRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPL 40 50 60 70 80 90 170 180 190 200 210 220 fk0886 HGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 HGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRR 100 110 120 130 140 150 230 240 250 260 270 280 fk0886 VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMML 160 170 180 190 200 210 290 300 310 320 330 340 fk0886 MPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVA 220 230 240 250 260 270 350 360 370 380 390 400 fk0886 VLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRK 280 290 300 310 320 330 410 420 430 440 450 460 fk0886 EVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAK 340 350 360 370 380 390 470 480 490 500 510 520 fk0886 LEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVP 400 410 420 430 440 450 530 540 550 560 570 580 fk0886 AVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHP 460 470 480 490 500 510 590 600 610 620 630 640 fk0886 PQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 PQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQD 520 530 540 550 560 570 650 660 670 680 690 700 fk0886 TVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQ 580 590 600 610 620 630 710 720 730 740 fk0886 SRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS ::::::::::::::::::::::::::::::::::::::: gi|194 SRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 640 650 660 670 >>gi|29427993|sp|Q9CZT4|RPC5_MOUSE DNA-directed RNA poly (710 aa) initn: 3217 init1: 3217 opt: 4362 Z-score: 4839.5 bits: 906.1 E(): 0 Smith-Waterman score: 4362; 92.254% identity (96.901% similar) in 710 aa overlap (35-742:1-710) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::.:::::::::::::::::::: gi|294 MANEEDDPVIQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|294 TYSSKLMDKQTFCSSQTTSNTARYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|294 EREAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM ::.:::::::::::::: ::::::::::::::::::::::::: :::::::::::::::: gi|294 YGMRDSRSEHERQYLLCQGSSGVENTELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD :::::::::::::.::::::::::::::::::::.::::::::::::::::::::::::: gi|294 AQLRTLPLADQIKVLMKNVKVMPFANLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA :::::::::::::.::::::::::::::::::::::::::::.::::::::::::::::: gi|294 ILYPKDSSSPHSGMPAEVLCRGRDFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMA 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG ::::::::::.:::: :::::::::::::::::.::::::::::::::::::::::.::. gi|294 VVRINKGWEFLLPYDLEFIKKHPDVVQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSA 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE :.::: :.::.:.::::::::::.:::::::::::.:. .: :.:.:::::.::: . gi|294 PVGLVSGEQRVQTAKTKAQQNHAFLERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGA 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EQEAEEE-PMDTSPSG-LHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEA : ::::: ::::.:: : .::::::: :::.: ::.:::: ::::.::: :::::::: gi|294 ELEAEEEEPMDTAPSTCLSTKLANGLPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEA 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 TFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTA ::::::::::::::::::::::.::::: ::::.:::::::::::::::::::::::::: gi|294 TFQRQFVLTLSELKRLFNLHLAGLPPGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTA 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 ASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKV ::::::::::::::::::::::::::::::::::::::.:::::::::::.::::::::: gi|294 ASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKV 640 650 660 670 680 690 730 740 fk0886 LKDCCVSYGGMWYLKGTVQS ::::::: :::::::::::: gi|294 LKDCCVSCGGMWYLKGTVQS 700 710 >>gi|74198301|dbj|BAE35318.1| unnamed protein product [M (710 aa) initn: 3213 init1: 3213 opt: 4358 Z-score: 4835.1 bits: 905.2 E(): 0 Smith-Waterman score: 4358; 92.113% identity (96.901% similar) in 710 aa overlap (35-742:1-710) 10 20 30 40 50 60 fk0886 PAGNWAVAAVRARPPRRDRAEGLRGWLSSSMANEEDDPVVQEIDVYLAKSLAEKLYLFQY :::::::::.:::::::::::::::::::: gi|741 MANEEDDPVIQEIDVYLAKSLAEKLYLFQY 10 20 30 70 80 90 100 110 120 fk0886 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETS 40 50 60 70 80 90 130 140 150 160 170 180 fk0886 TYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHR :::::::::::::::::::::.:::::::::::::::::::::::::.:::::::::::: gi|741 TYSSKLMDKQTFCSSQTTSNTARYAAALYRQGELHLTPLHGILQLRPNFSYLDKADAKHR 100 110 120 130 140 150 190 200 210 220 230 240 fk0886 EREAANEAGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|741 EREAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY 160 170 180 190 200 210 250 260 270 280 290 300 fk0886 YGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSM ::.:::::::::::::: ::::::::::::::::::::::::: :::::::::::::::: gi|741 YGMRDSRSEHERQYLLCQGSSGVENTELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSM 220 230 240 250 260 270 310 320 330 340 350 360 fk0886 AQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSD :::::::::::::.::::::::::::::::::::.::::::::::::::::::::::::: gi|741 AQLRTLPLADQIKVLMKNVKVMPFANLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSD 280 290 300 310 320 330 370 380 390 400 410 420 fk0886 ILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMA :::::::::::::.::::::::::::::::::::::::::::.::::::::::::::::: gi|741 ILYPKDSSSPHSGMPAEVLCRGRDFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMA 340 350 360 370 380 390 430 440 450 460 470 480 fk0886 VVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSG ::::::::::.:::: :::::::::::::::::.::::::::::::::::::::::.::. gi|741 VVRINKGWEFLLPYDLEFIKKHPDVVQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSA 400 410 420 430 440 450 490 500 510 520 530 540 fk0886 PAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDE :.::: :.::.:.::::::::::.:::::::::::.:. .: :.:.:::::.::: . gi|741 PVGLVSGEQRVQTAKTKAQQNHAFLERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGA 460 470 480 490 500 510 550 560 570 580 590 600 fk0886 EQEAEEE-PMDTSPSG-LHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEA : ::::: ::::.:: : .::::::: :::.: ::.:::: ::::.::: :::::::: gi|741 ELEAEEEEPMDTAPSTCLSTKLANGLPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEA 520 530 540 550 560 570 610 620 630 640 650 660 fk0886 TFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTA ::::::::::::::::::::::.::::: ::::.:::::::::::::::::::::::::: gi|741 TFQRQFVLTLSELKRLFNLHLAGLPPGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTA 580 590 600 610 620 630 670 680 690 700 710 720 fk0886 ASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKV ::::::::::::::::::::::::::::::::::::::.:::::::::::.::::::::: gi|741 ASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKV 640 650 660 670 680 690 730 740 fk0886 LKDCCVSYGGMWYLKGTVQS ::::::: :::::::::::: gi|741 LKDCCVSCGGMWYLKGTVQS 700 710 742 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 05:51:54 2008 done: Mon Aug 11 05:53:49 2008 Total Scan time: 972.670 Total Display time: 0.340 Function used was FASTA [version 34.26.5 April 26, 2007]