hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-05535003/chunk_1/iprscan-20080811-05535003.nocrc
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Query sequence: fk08867
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04801.4.ls Sin-like protein conserved region              953.2   9.5e-284   1
PF04801.4.fs Sin-like protein conserved region              951.3   3.7e-283   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04801.4.fs   1/1      38   468 ..     1   481 []   951.3 3.7e-283
PF04801.4.ls   1/1      38   468 ..     1   481 []   953.2 9.5e-284

Alignments of top-scoring domains:
PF04801.4.fs: domain 1 of 1, from 38 to 468: score 951.3, E = 3.7e-283
                   *->EEDDSveDpVVrEiDVfLakSlDanteLYvlQYPlRsswrDpYdlDe
                      EED    DpVV+EiDV+LakSl  +++LY++QYP+R++++ +Yd D+
     fk08867    38    EED----DPVVQEIDVYLAKSL--AEKLYLFQYPVRPASM-TYD-DI 76   

                   rceevrvkPsaqevEvdlaiDtesknYDrkKgEqfalnvDGKntYGAvpk
                   +++++++kP++q+vE+++aiDt+++nY+r+KgEq+alnvD     GA+++
     fk08867    77 PHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVD-----GACAD 121  

                   KGkGvealtykkkImdkqAFvssstivdvAkYAVGiFkgdelHLnPLhai
                        e++ty++k+mdkq+F+ss+t++++ +YA+++++++elHL+PLh+i
     fk08867   122 -----ETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGI 166  

                   vQLRPSlqhLdKdDkKkkeeEsakkaedsStdEAEedVKPSskqVtVkFS
                   +QLRPS+++LdK+D+K++e+E+a++a+dsS+dEAE+dV    kq+tV+FS
     fk08867   167 LQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDV----KQITVRFS 212  

                   RpesekqGKekrPVgsaetlqKkIAeEpWvelkyhgLkdsrseleaqkLl
                   Rpese++ +++r V+s+e+lqKk+AeEpWv+l+y+gL+dsrse+e+q+Ll
     fk08867   213 RPESEQA-RQRR-VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLL 260  

                   glssnGsesidLllDsPeeYlmkllaPvkrkiiggvKdiGelvaeSesve
                   + +s+G+e+++L++ sP+eYlm+l++P+ ++    +Kd  ++va+S+ v+
     fk08867   261 CPGSSGVENTELVK-SPSEYLMMLMPPSQEE----EKD--KPVAPSN-VL 302  

                   pvykKarLksLPlaelqlkvlmvkspvikfsdllslLapsaDpevsaDkv
                   ++   a+L++LPla+ q+k+lm++++v++f++l+slL+ps  ++v+   v
     fk08867   303 SM---AQLRTLPLAD-QIKILMKNVKVMPFANLMSLLGPSI-DSVA---V 344  

                   LavLkevAsLVQGlWVpKSellfPkdlasahsgvpGKtDLYRAEllvrAR
                   L+++++vA+LVQG+WV+KS++l+Pkd++s+hsgvp       AE+l+r+R
     fk08867   345 LRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVP-------AEVLCRGR 387  

                   DyvLylFsqstrvvrkeVmAvtklsekdvedvLktfAverealkdWkLkl
                   D+v+++F+qs++vvrkeV++vtkl+++dv+d+L+++Av+r ++k+W++ l
     fk08867   388 DFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVR-INKGWEFIL 436  

                   ppDkeFiEDkkYpevVkeQealWtqkeeeLekvl<-*
                   p+D eFi  kk+p+vV++Q++lWt+++++Lekv+   
     fk08867   437 PYDGEFI--KKHPDVVQRQHMLWTGIQAKLEKVY    468  

PF04801.4.ls: domain 1 of 1, from 38 to 468: score 953.2, E = 9.5e-284
                   *->EEDDSveDpVVrEiDVfLakSlDanteLYvlQYPlRsswrDpYdlDe
                      EED    DpVV+EiDV+LakSl  +++LY++QYP+R++++ +Yd D+
     fk08867    38    EED----DPVVQEIDVYLAKSL--AEKLYLFQYPVRPASM-TYD-DI 76   

                   rceevrvkPsaqevEvdlaiDtesknYDrkKgEqfalnvDGKntYGAvpk
                   +++++++kP++q+vE+++aiDt+++nY+r+KgEq+alnvD     GA+++
     fk08867    77 PHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVD-----GACAD 121  

                   KGkGvealtykkkImdkqAFvssstivdvAkYAVGiFkgdelHLnPLhai
                        e++ty++k+mdkq+F+ss+t++++ +YA+++++++elHL+PLh+i
     fk08867   122 -----ETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGI 166  

                   vQLRPSlqhLdKdDkKkkeeEsakkaedsStdEAEedVKPSskqVtVkFS
                   +QLRPS+++LdK+D+K++e+E+a++a+dsS+dEAE+dV    kq+tV+FS
     fk08867   167 LQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDV----KQITVRFS 212  

                   RpesekqGKekrPVgsaetlqKkIAeEpWvelkyhgLkdsrseleaqkLl
                   Rpese++ +++r V+s+e+lqKk+AeEpWv+l+y+gL+dsrse+e+q+Ll
     fk08867   213 RPESEQA-RQRR-VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLL 260  

                   glssnGsesidLllDsPeeYlmkllaPvkrkiiggvKdiGelvaeSesve
                   + +s+G+e+++L++ sP+eYlm+l++P+ ++    +Kd  ++va+S+ v+
     fk08867   261 CPGSSGVENTELVK-SPSEYLMMLMPPSQEE----EKD--KPVAPSN-VL 302  

                   pvykKarLksLPlaelqlkvlmvkspvikfsdllslLapsaDpevsaDkv
                   ++   a+L++LPla+ q+k+lm++++v++f++l+slL+ps  ++v+   v
     fk08867   303 SM---AQLRTLPLAD-QIKILMKNVKVMPFANLMSLLGPSI-DSVA---V 344  

                   LavLkevAsLVQGlWVpKSellfPkdlasahsgvpGKtDLYRAEllvrAR
                   L+++++vA+LVQG+WV+KS++l+Pkd++s+hsgvp       AE+l+r+R
     fk08867   345 LRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVP-------AEVLCRGR 387  

                   DyvLylFsqstrvvrkeVmAvtklsekdvedvLktfAverealkdWkLkl
                   D+v+++F+qs++vvrkeV++vtkl+++dv+d+L+++Av+r ++k+W++ l
     fk08867   388 DFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVR-INKGWEFIL 436  

                   ppDkeFiEDkkYpevVkeQealWtqkeeeLekvl<-*
                   p+D eFi  kk+p+vV++Q++lWt+++++Lekv+   
     fk08867   437 PYDGEFI--KKHPDVVQRQHMLWTGIQAKLEKVY    468  

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