hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-05535003/chunk_1/iprscan-20080811-05535003.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk08867 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04801.4.ls Sin-like protein conserved region 953.2 9.5e-284 1 PF04801.4.fs Sin-like protein conserved region 951.3 3.7e-283 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04801.4.fs 1/1 38 468 .. 1 481 [] 951.3 3.7e-283 PF04801.4.ls 1/1 38 468 .. 1 481 [] 953.2 9.5e-284 Alignments of top-scoring domains: PF04801.4.fs: domain 1 of 1, from 38 to 468: score 951.3, E = 3.7e-283 *->EEDDSveDpVVrEiDVfLakSlDanteLYvlQYPlRsswrDpYdlDe EED DpVV+EiDV+LakSl +++LY++QYP+R++++ +Yd D+ fk08867 38 EED----DPVVQEIDVYLAKSL--AEKLYLFQYPVRPASM-TYD-DI 76 rceevrvkPsaqevEvdlaiDtesknYDrkKgEqfalnvDGKntYGAvpk +++++++kP++q+vE+++aiDt+++nY+r+KgEq+alnvD GA+++ fk08867 77 PHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVD-----GACAD 121 KGkGvealtykkkImdkqAFvssstivdvAkYAVGiFkgdelHLnPLhai e++ty++k+mdkq+F+ss+t++++ +YA+++++++elHL+PLh+i fk08867 122 -----ETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGI 166 vQLRPSlqhLdKdDkKkkeeEsakkaedsStdEAEedVKPSskqVtVkFS +QLRPS+++LdK+D+K++e+E+a++a+dsS+dEAE+dV kq+tV+FS fk08867 167 LQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDV----KQITVRFS 212 RpesekqGKekrPVgsaetlqKkIAeEpWvelkyhgLkdsrseleaqkLl Rpese++ +++r V+s+e+lqKk+AeEpWv+l+y+gL+dsrse+e+q+Ll fk08867 213 RPESEQA-RQRR-VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLL 260 glssnGsesidLllDsPeeYlmkllaPvkrkiiggvKdiGelvaeSesve + +s+G+e+++L++ sP+eYlm+l++P+ ++ +Kd ++va+S+ v+ fk08867 261 CPGSSGVENTELVK-SPSEYLMMLMPPSQEE----EKD--KPVAPSN-VL 302 pvykKarLksLPlaelqlkvlmvkspvikfsdllslLapsaDpevsaDkv ++ a+L++LPla+ q+k+lm++++v++f++l+slL+ps ++v+ v fk08867 303 SM---AQLRTLPLAD-QIKILMKNVKVMPFANLMSLLGPSI-DSVA---V 344 LavLkevAsLVQGlWVpKSellfPkdlasahsgvpGKtDLYRAEllvrAR L+++++vA+LVQG+WV+KS++l+Pkd++s+hsgvp AE+l+r+R fk08867 345 LRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVP-------AEVLCRGR 387 DyvLylFsqstrvvrkeVmAvtklsekdvedvLktfAverealkdWkLkl D+v+++F+qs++vvrkeV++vtkl+++dv+d+L+++Av+r ++k+W++ l fk08867 388 DFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVR-INKGWEFIL 436 ppDkeFiEDkkYpevVkeQealWtqkeeeLekvl<-* p+D eFi kk+p+vV++Q++lWt+++++Lekv+ fk08867 437 PYDGEFI--KKHPDVVQRQHMLWTGIQAKLEKVY 468 PF04801.4.ls: domain 1 of 1, from 38 to 468: score 953.2, E = 9.5e-284 *->EEDDSveDpVVrEiDVfLakSlDanteLYvlQYPlRsswrDpYdlDe EED DpVV+EiDV+LakSl +++LY++QYP+R++++ +Yd D+ fk08867 38 EED----DPVVQEIDVYLAKSL--AEKLYLFQYPVRPASM-TYD-DI 76 rceevrvkPsaqevEvdlaiDtesknYDrkKgEqfalnvDGKntYGAvpk +++++++kP++q+vE+++aiDt+++nY+r+KgEq+alnvD GA+++ fk08867 77 PHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVD-----GACAD 121 KGkGvealtykkkImdkqAFvssstivdvAkYAVGiFkgdelHLnPLhai e++ty++k+mdkq+F+ss+t++++ +YA+++++++elHL+PLh+i fk08867 122 -----ETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGI 166 vQLRPSlqhLdKdDkKkkeeEsakkaedsStdEAEedVKPSskqVtVkFS +QLRPS+++LdK+D+K++e+E+a++a+dsS+dEAE+dV kq+tV+FS fk08867 167 LQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDV----KQITVRFS 212 RpesekqGKekrPVgsaetlqKkIAeEpWvelkyhgLkdsrseleaqkLl Rpese++ +++r V+s+e+lqKk+AeEpWv+l+y+gL+dsrse+e+q+Ll fk08867 213 RPESEQA-RQRR-VQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLL 260 glssnGsesidLllDsPeeYlmkllaPvkrkiiggvKdiGelvaeSesve + +s+G+e+++L++ sP+eYlm+l++P+ ++ +Kd ++va+S+ v+ fk08867 261 CPGSSGVENTELVK-SPSEYLMMLMPPSQEE----EKD--KPVAPSN-VL 302 pvykKarLksLPlaelqlkvlmvkspvikfsdllslLapsaDpevsaDkv ++ a+L++LPla+ q+k+lm++++v++f++l+slL+ps ++v+ v fk08867 303 SM---AQLRTLPLAD-QIKILMKNVKVMPFANLMSLLGPSI-DSVA---V 344 LavLkevAsLVQGlWVpKSellfPkdlasahsgvpGKtDLYRAEllvrAR L+++++vA+LVQG+WV+KS++l+Pkd++s+hsgvp AE+l+r+R fk08867 345 LRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVP-------AEVLCRGR 387 DyvLylFsqstrvvrkeVmAvtklsekdvedvLktfAverealkdWkLkl D+v+++F+qs++vvrkeV++vtkl+++dv+d+L+++Av+r ++k+W++ l fk08867 388 DFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVR-INKGWEFIL 436 ppDkeFiEDkkYpevVkeQealWtqkeeeLekvl<-* p+D eFi kk+p+vV++Q++lWt+++++Lekv+ fk08867 437 PYDGEFI--KKHPDVVQRQHMLWTGIQAKLEKVY 468 //