hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-06113384/chunk_1/iprscan-20080811-06113384.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk08969 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05986.4.ls ADAM-TS Spacer 1 185.1 1.5e-52 1 PF05986.4.fs ADAM-TS Spacer 1 183.2 5.8e-52 1 PF00090.9.fs Thrombospondin type 1 domain 56.1 3.1e-16 4 PF01421.9.fs Reprolysin (M12B) family zinc metallopro 60.1 5.4e-16 1 PF01421.9.ls Reprolysin (M12B) family zinc metallopro -0.2 5.7e-13 1 PF00090.9.ls Thrombospondin type 1 domain 50.8 4.2e-12 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01421.9.ls 1/1 34 211 .. 1 203 [] -0.2 5.7e-13 PF01421.9.fs 1/1 107 211 .. 96 203 .] 60.1 5.4e-16 PF00090.9.ls 1/3 305 355 .. 1 55 [] 36.7 7.2e-08 PF00090.9.fs 1/4 305 355 .. 1 55 [] 34.8 7.8e-10 PF05986.4.ls 1/1 460 572 .. 1 128 [] 185.1 1.5e-52 PF05986.4.fs 1/1 460 572 .. 1 128 [] 183.2 5.8e-52 PF00090.9.ls 2/3 583 638 .. 1 55 [] 10.4 0.0033 PF00090.9.ls 3/3 642 698 .. 1 55 [] 3.7 0.021 Alignments of top-scoring domains: PF01421.9.ls: domain 1 of 1, from 34 to 211: score -0.2, E = 5.7e-13 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIrV gs +n ++r + +++ fk08969 34 ----------------LGSTVNILVTRLI--------LLTE------ 50 vLvgLEIWsdgDkInvqsdandTLhsFgeWRetdLlkr............ d+ +++ +a L+sF +W+++ +++++++++ ++++ fk08969 51 ---------DQPTLEITHHAGKSLDSFCKWQKS-IVNHsghgnaipengv 90 ksHDnAqLLt......gidfdgntiGaAyvggmCspkrSvGVvqdhspiv +HD A L+t+ + +++ + t+G+A+vggmC ++rS+ V++d fk08969 91 ANHDTAVLITrydiciYKNKPCGTLGLAPVGGMCERERSCSVNEDI---G 137 llvAvtMAHELGHNLGmtHDdkntdgCtCe...gggsCIMnpv.asssps l+ A t+AHE+GH +Gm+HD+ + +C+ ++ ++ M+++ +++ + fk08969 138 LATAFTIAHEIGHTFGMNHDGVGN---SCGargQDPAKLMAAHiTMKTNP 184 kKkFSnCSkddyqkFltkqkpqCLlNkP<-* S+CS+d+ +Fl ++ + CL N+P fk08969 185 F-VWSSCSRDYITSFLDSGLGLCLNNRP 211 PF01421.9.fs: domain 1 of 1, from 107 to 211: score 60.1, E = 5.4e-16 *->gidfdgntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGH +++ + t+G+A+vggmC ++rS+ V++d l+ A t+AHE+GH fk08969 107 YKNKPCGTLGLAPVGGMCERERSCSVNEDI---GLATAFTIAHEIGH 150 NLGmtHDdkntdgCtCe...gggsCIMnpv.assspskKkFSnCSkddyq +Gm+HD+ + +C+ ++ ++ M+++ +++ + S+CS+d+ fk08969 151 TFGMNHDGVGN---SCGargQDPAKLMAAHiTMKTNPF-VWSSCSRDYIT 196 kFltkqkpqCLlNkP<-* +Fl ++ + CL N+P fk08969 197 SFLDSGLGLCLNNRP 211 PF00090.9.ls: domain 1 of 3, from 305 to 355: score 36.7, E = 7.2e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW++W +CS TCG+G+++ R c+sp P gg+ C g+ ++ + fk08969 305 GPWTPWGDCSRTCGGGVSSSSRHCDSPRPT-IGGKYCLGERRR--HR 348 aCdmmdkC<-* C + d C fk08969 349 SC-NTDDC 355 PF00090.9.fs: domain 1 of 4, from 305 to 355: score 34.8, E = 7.8e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW++W +CS TCG+G+++ R c+sp P gg+ C g+ ++ + fk08969 305 GPWTPWGDCSRTCGGGVSSSSRHCDSPRPT-IGGKYCLGERRR--HR 348 aCdmmdkC<-* C + d C fk08969 349 SC-NTDDC 355 PF05986.4.ls: domain 1 of 1, from 460 to 572: score 185.1, E = 1.5e-52 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA +t++G+F++as+gaGY+dVv+IP+G++hI+I++l++S ++LA fk08969 460 ETIEGVFSPASPGAGYEDVVWIPKGSVHIFIQDLNLSL-----SHLA 501 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt Lk+++ +s +L+G +++++p+r ++laGT+f+ ++ ++d + +sL+ fk08969 502 LKGDQ-ES-LLLEGLPGTPQPHR-LPLAGTTFQLRQ-GPD----QVQSLE 543 atGPtnepLivqvLfqggapnpgikYeYtiP<-* a+GP+n++Liv+vL++ ++ p+++Y++++P fk08969 544 ALGPINASLIVMVLAR--TELPALRYRFNAP 572 PF05986.4.fs: domain 1 of 1, from 460 to 572: score 183.2, E = 5.8e-52 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA +t++G+F++as+gaGY+dVv+IP+G++hI+I++l++S ++LA fk08969 460 ETIEGVFSPASPGAGYEDVVWIPKGSVHIFIQDLNLSL-----SHLA 501 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt Lk+++ +s +L+G +++++p+r ++laGT+f+ ++ ++d + +sL+ fk08969 502 LKGDQ-ES-LLLEGLPGTPQPHR-LPLAGTTFQLRQ-GPD----QVQSLE 543 atGPtnepLivqvLfqggapnpgikYeYtiP<-* a+GP+n++Liv+vL++ ++ p+++Y++++P fk08969 544 ALGPINASLIVMVLAR--TELPALRYRFNAP 572 PF00090.9.ls: domain 2 of 3, from 583 to 638: score 10.4, E = 0.0033 *->spWseWSpCSVTCGkGirtRqRvcnsp......aPqkkggepCtgdv + +W+ CS C +G+++ c ++ +++ aP +++++ ++++ fk08969 583 WHYAPWTKCSAQCAGGSQVQAVECRNQldssavAPH-YCSAHSKLPK 628 qeleteaCdmmdkC<-* ++ +aC + ++C fk08969 629 RQ---RAC-NTEPC 638 PF00090.9.ls: domain 3 of 3, from 642 to 698: score 3.7, E = 0.021 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + + WS CS +C G+r+R vc+ ++ + e +d+ +++ fk08969 642 WVVGNWSLCSRSCDAGVRSRSVVCQRRV---SAAEEKALDDSAcpqp 685 ..leteaCdmmdkC<-* ++ eaC + + C fk08969 686 rpPVLEAC-HGPTC 698 //