hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-06113384/chunk_1/iprscan-20080811-06113384.nocrc
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Query sequence: fk08969
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00209                                                 123.6    2.2e-32   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00209    1/5     304   356 ..     1    66 []    53.9  2.1e-11
SM00209    2/5     582   639 ..     1    66 []    33.0    4e-05
SM00209    3/5     641   694 ..     1    66 []    23.0    0.029
SM00209    4/5     749   806 ..     1    66 []     8.2      1.3
SM00209    5/5     809   845 ..     1    66 []     5.4      2.7

Alignments of top-scoring domains:
SM00209: domain 1 of 5, from 304 to 356: score 53.9, E = 2.1e-11
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++W++W++CS +tCGgG     v + +R    +c sp p     gg
     fk08969   304    WGPWTPWGDCS-RTCGGG-----VSSSSR----HCDSPRPT---IGG 337  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C ++++  r Cnt+    +Cp   
     fk08969   338 KYCLgerrRHRSCNTD----DCP    356  

SM00209: domain 2 of 5, from 582 to 639: score 33.0, E = 4e-05
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +   +W+ CS ++C gG      ++   +    c +   ++  +  
     fk08969   582    SWHYAPWTKCS-AQCAGG-----SQVQAVE----CRNQLDSSA-VAP 617  

                   epCs.......EtrpCntqpnLqpCp<-*
                   ++Cs +++ ++ +r+Cnt+    pCp   
     fk08969   618 HYCSahsklpkRQRACNTE----PCP    639  

SM00209: domain 3 of 5, from 641 to 694: score 23.0, E = 0.029
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  + WS CS ++C  G     vr+R+      +c    +     +
     fk08969   641    DWVVGNWSLCS-RSCDAG-----VRSRSV-----VCQRRVS--AAEE 674  

                   epCs.....EtrpCntqpnLqpCp<-*
                   +  +++  ++ rp  ++    +C+   
     fk08969   675 KALDdsacpQPRPPVLE----ACH    694  

SM00209: domain 4 of 5, from 749 to 806: score 8.2, E = 1.3
                   *->wseWseWS.pCSgvtCGgGgrtegvrtRtRsslrvccspppprnqng
                       s+  +   +C+  +CG G      r+R+      c+s+  ++   +
     fk08969   749    LSTKRPFQlQCT-PSCGPG-----LRHRVV----LCKSADHRAT-LP 784  

                   gepCs......EtrpCntqpnLqpCp<-*
                    ++Cs+  +++ t  Cn++     Cp   
     fk08969   785 PAHCSpaakppATMRCNLR----RCP    806  

SM00209: domain 5 of 5, from 809 to 845: score 5.4, E = 2.7
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  +eW++CS ++CG G      r+R+ +    c s+         
     fk08969   809    RWVAGEWGECS-AQCGVG-----QRQRSVR----CTSH--------- 836  

                   epCsEtrpCntqpnLqpCp<-*
                        t + +      +C    
     fk08969   837 -----TGQASH-----ECT    845  

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