hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-06240366/chunk_1/iprscan-20080811-06240366.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk08996 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 486.5 3e-143 15 PF00096.16.fs Zinc finger, C2H2 type 456.9 2.3e-134 15 PF01096.9.fs Transcription factor S-II (TFIIS) 97.8 1.3e-29 13 PF01286.9.fs XPA protein N-terminal 70.0 3.5e-19 12 PF07754.2.fs Domain of unknown function (DUF1610) 48.5 5.4e-12 13 PF02892.5.fs BED zinc finger 30.2 3.1e-08 7 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 21.4 2.9e-06 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/15 140 162 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 2/15 140 162 .. 1 24 [] 37.0 6.1e-08 PF00096.16.fs 3/15 168 190 .. 1 24 [] 29.2 5.1e-06 PF00096.16.ls 3/15 168 190 .. 1 24 [] 31.1 3.6e-06 PF00096.16.ls 4/15 196 218 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 4/15 196 218 .. 1 24 [] 33.7 3.7e-07 PF00096.16.ls 5/15 224 246 .. 1 24 [] 27.3 5e-05 PF00096.16.fs 5/15 224 246 .. 1 24 [] 25.3 4.5e-05 PF00096.16.ls 6/15 252 274 .. 1 24 [] 35.6 1.5e-07 PF00096.16.fs 6/15 252 274 .. 1 24 [] 33.7 3.8e-07 PF00096.16.fs 7/15 280 302 .. 1 24 [] 27.7 1.2e-05 PF00096.16.ls 7/15 280 302 .. 1 24 [] 29.7 9.8e-06 PF00096.16.ls 8/15 308 330 .. 1 24 [] 38.7 1.8e-08 PF00096.16.fs 8/15 308 330 .. 1 24 [] 36.8 6.5e-08 PF00096.16.ls 9/15 336 358 .. 1 24 [] 38.7 1.8e-08 PF00096.16.fs 9/15 336 358 .. 1 24 [] 36.8 6.5e-08 PF00096.16.fs 10/15 364 386 .. 1 24 [] 34.2 2.9e-07 PF00096.16.ls 10/15 364 386 .. 1 24 [] 36.1 1.1e-07 PF00096.16.ls 11/15 392 414 .. 1 24 [] 34.3 3.9e-07 PF00096.16.fs 11/15 392 414 .. 1 24 [] 32.3 8.3e-07 PF00096.16.ls 12/15 420 442 .. 1 24 [] 36.1 1.2e-07 PF00096.16.fs 12/15 420 442 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 13/15 448 470 .. 1 24 [] 30.8 4.3e-06 PF00096.16.fs 13/15 448 470 .. 1 24 [] 28.9 6.1e-06 PF00096.16.fs 14/15 476 498 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 14/15 476 498 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 15/15 504 526 .. 1 24 [] 32.5 7.7e-07 PF00096.16.ls 15/15 504 526 .. 1 24 [] 34.4 3.6e-07 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 15, from 140 to 162: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+ ksnL +H+r+H fk08996 140 FKCD-ICGKIFNKKSNLASHQRIH 162 PF00096.16.ls: domain 2 of 15, from 140 to 162: score 37.0, E = 6.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+ ksnL +H+r+H fk08996 140 FKCD-ICGKIFNKKSNLASHQRIH 162 PF00096.16.fs: domain 3 of 15, from 168 to 190: score 29.2, E = 5.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L +H+r+H fk08996 168 YKCN-ECGKVFHNMSHLAQHRRIH 190 PF00096.16.ls: domain 3 of 15, from 168 to 190: score 31.1, E = 3.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L +H+r+H fk08996 168 YKCN-ECGKVFHNMSHLAQHRRIH 190 PF00096.16.ls: domain 4 of 15, from 196 to 218: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ s+L +H+r+H fk08996 196 YKCN-ECGKVFNQISHLAQHQRIH 218 PF00096.16.fs: domain 4 of 15, from 196 to 218: score 33.7, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ s+L +H+r+H fk08996 196 YKCN-ECGKVFNQISHLAQHQRIH 218 PF00096.16.ls: domain 5 of 15, from 224 to 246: score 27.3, E = 5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L +H+ +H fk08996 224 YKCN-ECGKVFHQISHLAQHRTIH 246 PF00096.16.fs: domain 5 of 15, from 224 to 246: score 25.3, E = 4.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F + s+L +H+ +H fk08996 224 YKCN-ECGKVFHQISHLAQHRTIH 246 PF00096.16.ls: domain 6 of 15, from 252 to 274: score 35.6, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+s L +Hl +H fk08996 252 YECN-KCGKVFSRNSYLVQHLIIH 274 PF00096.16.fs: domain 6 of 15, from 252 to 274: score 33.7, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr+s L +Hl +H fk08996 252 YECN-KCGKVFSRNSYLVQHLIIH 274 PF00096.16.fs: domain 7 of 15, from 280 to 302: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + s+L +H+r+H fk08996 280 YRCN-VCGKVFHHISHLAQHQRIH 302 PF00096.16.ls: domain 7 of 15, from 280 to 302: score 29.7, E = 9.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + s+L +H+r+H fk08996 280 YRCN-VCGKVFHHISHLAQHQRIH 302 PF00096.16.ls: domain 8 of 15, from 308 to 330: score 38.7, E = 1.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L +H+r+H fk08996 308 YKCN-ECGKVFSHKSSLVNHWRIH 330 PF00096.16.fs: domain 8 of 15, from 308 to 330: score 36.8, E = 6.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L +H+r+H fk08996 308 YKCN-ECGKVFSHKSSLVNHWRIH 330 PF00096.16.ls: domain 9 of 15, from 336 to 358: score 38.7, E = 1.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L +H+r+H fk08996 336 YKCN-ECGKVFSHKSSLVNHWRIH 358 PF00096.16.fs: domain 9 of 15, from 336 to 358: score 36.8, E = 6.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L +H+r+H fk08996 336 YKCN-ECGKVFSHKSSLVNHWRIH 358 PF00096.16.fs: domain 10 of 15, from 364 to 386: score 34.2, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+s L +Hl +H fk08996 364 YKCN-ECGKVFSRNSYLAQHLIIH 386 PF00096.16.ls: domain 10 of 15, from 364 to 386: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr+s L +Hl +H fk08996 364 YKCN-ECGKVFSRNSYLAQHLIIH 386 PF00096.16.ls: domain 11 of 15, from 392 to 414: score 34.3, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+Fs++s+L +H r+H fk08996 392 YKCD-ECDKAFSQNSHLVQHHRIH 414 PF00096.16.fs: domain 11 of 15, from 392 to 414: score 32.3, E = 8.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+Fs++s+L +H r+H fk08996 392 YKCD-ECDKAFSQNSHLVQHHRIH 414 PF00096.16.ls: domain 12 of 15, from 420 to 442: score 36.1, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L H+r+H fk08996 420 YKCD-ECGKVFSQNSYLAYHWRIH 442 PF00096.16.fs: domain 12 of 15, from 420 to 442: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs++s L H+r+H fk08996 420 YKCD-ECGKVFSQNSYLAYHWRIH 442 PF00096.16.ls: domain 13 of 15, from 448 to 470: score 30.8, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s+L +H+++H fk08996 448 YKCN-ECGKVFGLNSSLAHHRKIH 470 PF00096.16.fs: domain 13 of 15, from 448 to 470: score 28.9, E = 6.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +s+L +H+++H fk08996 448 YKCN-ECGKVFGLNSSLAHHRKIH 470 PF00096.16.fs: domain 14 of 15, from 476 to 498: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs +s+L++H +H fk08996 476 FKCN-ECGKAFSMRSSLTNHHAIH 498 PF00096.16.ls: domain 14 of 15, from 476 to 498: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs +s+L++H +H fk08996 476 FKCN-ECGKAFSMRSSLTNHHAIH 498 PF00096.16.fs: domain 15 of 15, from 504 to 526: score 32.5, E = 7.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+++s L rH+r H fk08996 504 FKCN-ECGKLFRDNSYLVRHQRFH 526 PF00096.16.ls: domain 15 of 15, from 504 to 526: score 34.4, E = 3.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F+++s L rH+r H fk08996 504 FKCN-ECGKLFRDNSYLVRHQRFH 526 //