hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-06240366/chunk_1/iprscan-20080811-06240366.nocrc
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Query sequence: fk08996
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 415.9   2.2e-120  15

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/15    112   134 ..     1    23 []     7.7       42
SM00355      2/15    140   162 ..     1    23 []    30.8  0.00019
SM00355      3/15    168   190 ..     1    23 []    30.0  0.00032
SM00355      4/15    196   218 ..     1    23 []    31.7   0.0001
SM00355      5/15    224   246 ..     1    23 []    27.0   0.0027
SM00355      6/15    252   274 ..     1    23 []    28.8  0.00074
SM00355      7/15    280   302 ..     1    23 []    28.1   0.0012
SM00355      8/15    308   330 ..     1    23 []    32.6  5.5e-05
SM00355      9/15    336   358 ..     1    23 []    32.6  5.5e-05
SM00355     10/15    364   386 ..     1    23 []    29.7  0.00041
SM00355     11/15    392   414 ..     1    23 []    27.5   0.0018
SM00355     12/15    420   442 ..     1    23 []    28.5  0.00092
SM00355     13/15    448   470 ..     1    23 []    27.2   0.0022
SM00355     14/15    476   498 ..     1    23 []    27.0   0.0027
SM00355     15/15    504   526 ..     1    23 []    26.8   0.0031

Alignments of top-scoring domains:
SM00355: domain 1 of 15, from 112 to 134: score 7.7, E = 42
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++  gk f++  +++ H+ +H   
     fk08996   112    YKCNE-RGKAFHQGlHFTIHQIIH    134  

SM00355: domain 2 of 15, from 140 to 162: score 30.8, E = 0.00019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+i Cgk f+ k++L  H+r+H   
     fk08996   140    FKCDI-CGKIFNKKsNLASHQRIH    162  

SM00355: domain 3 of 15, from 168 to 190: score 30.0, E = 0.00032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f++ ++L +H r+H   
     fk08996   168    YKCNE-CGKVFHNMsHLAQHRRIH    190  

SM00355: domain 4 of 15, from 196 to 218: score 31.7, E = 0.0001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f++ ++L +H+r+H   
     fk08996   196    YKCNE-CGKVFNQIsHLAQHQRIH    218  

SM00355: domain 5 of 15, from 224 to 246: score 27.0, E = 0.0027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f++ ++L +H  +H   
     fk08996   224    YKCNE-CGKVFHQIsHLAQHRTIH    246  

SM00355: domain 6 of 15, from 252 to 274: score 28.8, E = 0.00074
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+ + L++H+ +H   
     fk08996   252    YECNK-CGKVFSRNsYLVQHLIIH    274  

SM00355: domain 7 of 15, from 280 to 302: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f++ ++L +H+r+H   
     fk08996   280    YRCNV-CGKVFHHIsHLAQHQRIH    302  

SM00355: domain 8 of 15, from 308 to 330: score 32.6, E = 5.5e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+fs+k++L++H r+H   
     fk08996   308    YKCNE-CGKVFSHKsSLVNHWRIH    330  

SM00355: domain 9 of 15, from 336 to 358: score 32.6, E = 5.5e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+fs+k++L++H r+H   
     fk08996   336    YKCNE-CGKVFSHKsSLVNHWRIH    358  

SM00355: domain 10 of 15, from 364 to 386: score 29.7, E = 0.00041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+fs+ + L +H+ +H   
     fk08996   364    YKCNE-CGKVFSRNsYLAQHLIIH    386  

SM00355: domain 11 of 15, from 392 to 414: score 27.5, E = 0.0018
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k fs+ ++L++H r+H   
     fk08996   392    YKCDE-CDKAFSQNsHLVQHHRIH    414  

SM00355: domain 12 of 15, from 420 to 442: score 28.5, E = 0.00092
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+fs+ + L  H r+H   
     fk08996   420    YKCDE-CGKVFSQNsYLAYHWRIH    442  

SM00355: domain 13 of 15, from 448 to 470: score 27.2, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk+f   ++L +H ++H   
     fk08996   448    YKCNE-CGKVFGLNsSLAHHRKIH    470  

SM00355: domain 14 of 15, from 476 to 498: score 27.0, E = 0.0027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk fs +++L++H  +H   
     fk08996   476    FKCNE-CGKAFSMRsSLTNHHAIH    498  

SM00355: domain 15 of 15, from 504 to 526: score 26.8, E = 0.0031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++ + L+rH+r H   
     fk08996   504    FKCNE-CGKLFRDNsYLVRHQRFH    526  

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