hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-06294642/chunk_1/iprscan-20080811-06294642.nocrc
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Query sequence: fk09019
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00856.18.fs SET domain                                      60.5    1.3e-16   1
PF00856.18.ls SET domain                                      62.0    1.8e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00856.18.fs   1/1     194   335 ..     1   259 []    60.5  1.3e-16
PF00856.18.ls   1/1     194   335 ..     1   259 []    62.0  1.8e-15

Alignments of top-scoring domains:
PF00856.18.fs: domain 1 of 1, from 194 to 335: score 60.5, E = 1.3e-16
                   *->vqkgkwlrlegfkte...................ikGwGlratedIp
                      +q +  + +  ++++   ++++ +  + ++ ++++ G  ++at++++
     fk09019   194    MQEKLFKEHVFIYLRmfatdsgfeilpcnrysseQNGAKIVATKEWK 240  

                   kGefiiEYpGelitseeaekreddllglklydndgdksldeYlfdldalf
                   ++++i   +G + + +e e+++      +l++ ++d s+ +Y  + ++  
     fk09019   241 RNDKIELLVGCIAELSEIEENM------LLRHGENDFSV-MYSTRKNC-- 281  

                   LlyEklkSfWkpYiiLPdysPlfWseeellLkGtqlletdkleleeydll
                                                                     
     fk09019     - -------------------------------------------------- -    

                   aeeievvlqhklFpdveeefsfedflWaasivsSRafslvegvnresens
                                                                     
     fk09019     - -------------------------------------------------- -    

                   egslelviDAtrkGNiaRFiNHSCePNcevqvvfvdgedpgsdedaglep
                            A+ + + a FiNH C+PNc+ +                   
     fk09019   282 ---------AQLWLGPAAFINHDCRPNCKFVST----------------- 305  

                   gdprivlfAlrdIpaGeELtydYgydksnge<-*
                   g+   ++ AlrdI++GeE++  Yg d ++ge   
     fk09019   306 GRDTACVKALRDIEPGEEISCYYG-DGFFGE    335  

PF00856.18.ls: domain 1 of 1, from 194 to 335: score 62.0, E = 1.8e-15
                   *->vqkgkwlrlegfkte...................ikGwGlratedIp
                      +q +  + +  ++++   ++++ +  + ++ ++++ G  ++at++++
     fk09019   194    MQEKLFKEHVFIYLRmfatdsgfeilpcnrysseQNGAKIVATKEWK 240  

                   kGefiiEYpGelitseeaekreddllglklydndgdksldeYlfdldalf
                   ++++i   +G + + +e e+++      +l++ ++d s+ +Y  + ++  
     fk09019   241 RNDKIELLVGCIAELSEIEENM------LLRHGENDFSV-MYSTRKNC-- 281  

                   LlyEklkSfWkpYiiLPdysPlfWseeellLkGtqlletdkleleeydll
                                                                     
     fk09019     - -------------------------------------------------- -    

                   aeeievvlqhklFpdveeefsfedflWaasivsSRafslvegvnresens
                                                                     
     fk09019     - -------------------------------------------------- -    

                   egslelviDAtrkGNiaRFiNHSCePNcevqvvfvdgedpgsdedaglep
                            A+ + + a FiNH C+PNc+ +                   
     fk09019   282 ---------AQLWLGPAAFINHDCRPNCKFVST----------------- 305  

                   gdprivlfAlrdIpaGeELtydYgydksnge<-*
                   g+   ++ AlrdI++GeE++  Yg d ++ge   
     fk09019   306 GRDTACVKALRDIEPGEEISCYYG-DGFFGE    335  

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