hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-06294642/chunk_1/iprscan-20080811-06294642.nocrc
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Query sequence: fk09019
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00317                                                  72.3    6.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00317    1/1     219   335 ..     1   114 []    72.3  6.2e-17

Alignments of top-scoring domains:
SM00317: domain 1 of 1, from 219 to 335: score 72.3, E = 6.2e-17
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                       +   + s++ G  ++at++++++++I   vG i + ++ +++   +
     fk09019   219    LPCNRYSSEQNGAKIVATKEWKRNDKIELLVGCIAelseieenmllr 265  

                   ......fylfd...ciDatranggkGniarfiNHSCePNcelifvevdgf
                   +++++ ++++++++++ ++     + ++a fiNH+C+PNc+ + + +d+ 
     fk09019   266 hgendfSVMYStrkNCAQL-----WLGPAAFINHDCRPNCKFVSTGRDT- 309  

                   dprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                                +++AlrdI+pGEE+++ Ygd ++ge   
     fk09019   310 ------------ACVKALRDIEPGEEISCYYGDGFFGE    335  

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