hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-07062104/chunk_1/iprscan-20080811-07062104.nocrc
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Query sequence: fk09431
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01652.9.ls Eukaryotic initiation factor 4E                455.0   8.9e-134   1
PF01652.9.fs Eukaryotic initiation factor 4E                453.1   3.3e-133   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01652.9.fs   1/1      27   243 .]     1   232 []   453.1 3.3e-133
PF01652.9.ls   1/1      27   243 .]     1   232 []   455.0 8.9e-134

Alignments of top-scoring domains:
PF01652.9.fs: domain 1 of 1, from 27 to 243: score 453.1, E = 3.3e-133
                   *->etsepsteet.EevevpqekaapalkesaevsgPaEhlvkHPLqrnW
                      +++e+st++++E+++++++k+++++k++a+v+gPa    +HPLq+n+
     fk09431    27    QNEENSTQKDgEKEKTERDKNQSSSKRKAVVPGPA----EHPLQYNY 69   

                   TlWYlkpdrgkPfksesWednlkpvttFdTVEeFWaLYnhIkrPSeLplg
                   T+WY+++++g+P++s+s+e+n+k+++tF++VE+FW++Y+h+ rP++L+ +
     fk09431    70 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGH 119  

                   sDYhlFKdGIrPmWEDpaNknGGKWlitlsKgrspedLDrmWLetLLAlI
                   sD+hlFK+GI+PmWED+aNknGGKW+i+l+Kg++    +r+W++++LA+ 
     fk09431   120 SDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAML 165  

                   GEQFDedgdeICGAVvnVRgkgdkISiWTknAsdeeaqlrIGkklKevLn
                   GEQF+ +g+eICGAVv+VR+++d+ISiW+k+Asd+++++rI+++l++vLn
     fk09431   166 GEQFM-VGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 214  

                   lPSkiHlPrndvleYkvHdDskkktRSstrktrytl<-*
                   lP      +n+++eYk+H+Ds+k++ Ss r+t++tl   
     fk09431   215 LP------PNTIMEYKTHTDSIKDN-SSFRNTKITL    243  

PF01652.9.ls: domain 1 of 1, from 27 to 243: score 455.0, E = 8.9e-134
                   *->etsepsteet.EevevpqekaapalkesaevsgPaEhlvkHPLqrnW
                      +++e+st++++E+++++++k+++++k++a+v+gPa    +HPLq+n+
     fk09431    27    QNEENSTQKDgEKEKTERDKNQSSSKRKAVVPGPA----EHPLQYNY 69   

                   TlWYlkpdrgkPfksesWednlkpvttFdTVEeFWaLYnhIkrPSeLplg
                   T+WY+++++g+P++s+s+e+n+k+++tF++VE+FW++Y+h+ rP++L+ +
     fk09431    70 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGH 119  

                   sDYhlFKdGIrPmWEDpaNknGGKWlitlsKgrspedLDrmWLetLLAlI
                   sD+hlFK+GI+PmWED+aNknGGKW+i+l+Kg++    +r+W++++LA+ 
     fk09431   120 SDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLA----SRCWENLILAML 165  

                   GEQFDedgdeICGAVvnVRgkgdkISiWTknAsdeeaqlrIGkklKevLn
                   GEQF+ +g+eICGAVv+VR+++d+ISiW+k+Asd+++++rI+++l++vLn
     fk09431   166 GEQFM-VGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 214  

                   lPSkiHlPrndvleYkvHdDskkktRSstrktrytl<-*
                   lP      +n+++eYk+H+Ds+k++ Ss r+t++tl   
     fk09431   215 LP------PNTIMEYKTHTDSIKDN-SSFRNTKITL    243  

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