hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-07174943/chunk_1/iprscan-20080811-07174943.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk09458
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00171.12.fs Aldehyde dehydrogenase family                  244.4    2.6e-75   1
PF00171.12.ls Aldehyde dehydrogenase family                  151.8    1.6e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00171.12.ls   1/1       1   401 [.     1   479 []   151.8  1.6e-42
PF00171.12.fs   1/1      71   393 ..   132   471 ..   244.4  2.6e-75

Alignments of top-scoring domains:
PF00171.12.ls: domain 1 of 1, from 1 to 401: score 151.8, E = 1.6e-42
                   *->WvdsssGsetievinPathgeviatvpaataeDvdaAvaAAraAfks
                                                                + ++ 
     fk09458     1    ------------------------------------------QQLE- 4    

                   GaWaktppaeRariLrkaAdlleeradeLAeletlEtGKplaeArgaevp
                    a +++  ++  +iL ++A+ l   + e+           ++  +g e++
     fk09458     5 -ALRRMVQEREKDILTAIAADLC--KSEFNVYSQE-----VITVLG-EID 45   

                   raidtlryyAgl..arkleGetips.dtdapggpgrlaytrRePvGVVga
                    + ++l +   +++ +k    ++ + d          ay++ +P+GVV++
     fk09458    46 FMLENLPEWVTAkpVKK---NVLTMlD---------EAYIQPQPLGVVLI 83   

                   ItPWNFPlllaawKiAPALAaGNtVVlKPaElTPlsalllAelfeeAGlP
                   I  WN+P+ l    +  A+AaGN+V++KP+El+  +a +lA+l+    l 
     fk09458    84 IGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQ-YLD 132  

                   aGVlNvVtGsGsevGdaLveHPdvdkvsFTGSTavGrrIaeaAalknlKr
                     +  v+ G G e    L    + d++  TG TavG++++eaAa k+l++
     fk09458   133 QDLYIVING-GVEETTELLK-QRFDHIFYTGNTAVGKIVMEAAA-KHLTP 179  

                   vtLELGGKsPlIVfdDADLdaAvegavfgaFfnaGQvCtAgsRllVhesi
                   vtLELGGKsP+ + +D+DLd + + + +g++ n+GQ+C+A+  +l + s 
     fk09458   180 VTLELGGKSPCYIDKDCDLDIVCRRITWGKYMNCGQTCIAPDYILCEASL 229  

                   yDeFverlveaakklkvGd..PlDpdtdiGPliskkqlekvlsyiedAke
                     + v +++e +k    G +    pd +   +i+ ++++++ls+     e
     fk09458   230 QNQIVWKIKETVKEF-YGEniKESPDYER--IINLRHFKRILSL----LE 272  

                   eGAklltGGerrpeeaglekG.yfvePTvladVtpdmriaqEEiFGPVls
                    G k++ GGe        ++ + +++PTvl+dV+p+ +++qEEiFGP+l+
     fk09458   273 -GQKIAFGGET-------DEAtRYIAPTVLTDVDPKTKVMQEEIFGPILP 314  

                   vipFddeeEAIelANdteYGLaagVfTrDldrAlrvarrleaGtVwiNdy
                   + p+++++EAI   N  e  La +Vf+ + + + r++++  +G+V  Nd 
     fk09458   315 IVPVKNVDEAINFINEREKPLALYVFSHNHKLIKRMIDETSSGGVTGNDV 364  

                   ttgdpeaaqPFGGfKqSGiGgREgGkegleeYtetKtV<-*
                   ++    + +PFGG++ SG+G   +Gk++++ ++  +     
     fk09458   365 IMHFTLNSFPFGGVGSSGMG-AYHGKHSFDTFSHQRPC    401  

PF00171.12.fs: domain 1 of 1, from 71 to 393: score 244.4, E = 2.6e-75
                   *->aytrRePvGVVgaItPWNFPlllaawKiAPALAaGNtVVlKPaElTP
                      ay++ +P+GVV++I  WN+P+ l    +  A+AaGN+V++KP+El+ 
     fk09458    71    AYIQPQPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSE 117  

                   lsalllAelfeeAGlPaGVlNvVtGsGsevGdaLveHPdvdkvsFTGSTa
                    +a +lA+l+    l   +  v+ G G e    L    + d++  TG Ta
     fk09458   118 NTAKILAKLLPQ-YLDQDLYIVING-GVEETTELLK-QRFDHIFYTGNTA 164  

                   vGrrIaeaAalknlKrvtLELGGKsPlIVfdDADLdaAvegavfgaFfna
                   vG++++eaAa k+l++vtLELGGKsP+ + +D+DLd + + + +g++ n+
     fk09458   165 VGKIVMEAAA-KHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMNC 213  

                   GQvCtAgsRllVhesiyDeFverlveaakklkvGd..PlDpdtdiGPlis
                   GQ+C+A+  +l + s   + v +++e +k    G +    pd +   +i+
     fk09458   214 GQTCIAPDYILCEASLQNQIVWKIKETVKEF-YGEniKESPDYER--IIN 260  

                   kkqlekvlsyiedAkeeGAklltGGerrpeeaglekG.yfvePTvladVt
                    ++++++ls+     e G k++ GGe        ++ + +++PTvl+dV+
     fk09458   261 LRHFKRILSL----LE-GQKIAFGGET-------DEAtRYIAPTVLTDVD 298  

                   pdmriaqEEiFGPVlsvipFddeeEAIelANdteYGLaagVfTrDldrAl
                   p+ +++qEEiFGP+l++ p+++++EAI   N  e  La +Vf+ + + + 
     fk09458   299 PKTKVMQEEIFGPILPIVPVKNVDEAINFINEREKPLALYVFSHNHKLIK 348  

                   rvarrleaGtVwiNdyttgdpeaaqPFGGfKqSGiGgREgGkegle<-*
                   r++++  +G+V  Nd ++    + +PFGG++ SG+G   +Gk++++   
     fk09458   349 RMIDETSSGGVTGNDVIMHFTLNSFPFGGVGSSGMG-AYHGKHSFD    393  

//