hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-07252457/chunk_1/iprscan-20080811-07252457.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk09522 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 585.7 3.9e-173 17 PF00096.16.fs Zinc finger, C2H2 type 557.3 1.5e-164 17 PF01096.9.fs Transcription factor S-II (TFIIS) 69.2 1e-20 15 PF01286.9.fs XPA protein N-terminal 49.9 1.8e-13 15 PF03604.4.fs DNA directed RNA polymerase, 7 kDa sub 30.2 5e-07 7 PF07754.2.fs Domain of unknown function (DUF1610) 29.1 9.1e-07 12 PF08792.1.fs A2L zinc ribbon domain 22.4 6.4e-05 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/17 190 212 .. 1 24 [] 26.6 2.2e-05 PF00096.16.ls 1/17 190 212 .. 1 24 [] 28.6 2.1e-05 PF00096.16.fs 2/17 246 268 .. 1 24 [] 30.6 2.2e-06 PF00096.16.ls 2/17 246 268 .. 1 24 [] 32.6 1.3e-06 PF00096.16.fs 3/17 274 296 .. 1 24 [] 34.2 2.8e-07 PF00096.16.ls 3/17 274 296 .. 1 24 [] 36.2 1.1e-07 PF00096.16.fs 4/17 302 324 .. 1 24 [] 35.3 1.5e-07 PF00096.16.ls 4/17 302 324 .. 1 24 [] 37.2 5.1e-08 PF00096.16.fs 5/17 330 352 .. 1 24 [] 38.4 2.3e-08 PF00096.16.ls 5/17 330 352 .. 1 24 [] 40.4 5.8e-09 PF00096.16.ls 6/17 358 380 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 6/17 358 380 .. 1 24 [] 33.7 3.7e-07 PF00096.16.fs 7/17 386 408 .. 1 24 [] 35.5 1.3e-07 PF00096.16.ls 7/17 386 408 .. 1 24 [] 37.5 4.2e-08 PF00096.16.ls 8/17 414 436 .. 1 24 [] 37.3 5e-08 PF00096.16.fs 8/17 414 436 .. 1 24 [] 35.3 1.5e-07 PF00096.16.ls 9/17 442 464 .. 1 24 [] 39.7 9e-09 PF00096.16.fs 9/17 442 464 .. 1 24 [] 37.8 3.5e-08 PF00096.16.ls 10/17 470 492 .. 1 24 [] 33.0 9.8e-07 PF00096.16.fs 10/17 470 492 .. 1 24 [] 31.0 1.8e-06 PF00096.16.fs 11/17 498 520 .. 1 24 [] 35.3 1.5e-07 PF00096.16.ls 11/17 498 520 .. 1 24 [] 37.2 5.1e-08 PF00096.16.ls 12/17 526 548 .. 1 24 [] 35.2 2.2e-07 PF00096.16.fs 12/17 526 548 .. 1 24 [] 33.2 5.1e-07 PF00096.16.ls 13/17 554 576 .. 1 24 [] 36.9 6.3e-08 PF00096.16.fs 13/17 554 576 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 15/17 610 632 .. 1 24 [] 35.0 2.4e-07 PF00096.16.fs 15/17 610 632 .. 1 24 [] 33.0 5.5e-07 PF00096.16.fs 16/17 638 660 .. 1 24 [] 30.6 2.2e-06 PF00096.16.ls 16/17 638 660 .. 1 24 [] 32.6 1.3e-06 PF00096.16.fs 17/17 666 688 .. 1 24 [] 34.7 2.1e-07 PF00096.16.ls 17/17 666 688 .. 1 24 [] 36.7 7.5e-08 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 17, from 190 to 212: score 26.6, E = 2.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C F++ks+L H+r+H fk09522 190 YVCT-ECVMGFTQKSHLFEHQRIH 212 PF00096.16.ls: domain 1 of 17, from 190 to 212: score 28.6, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C F++ks+L H+r+H fk09522 190 YVCT-ECVMGFTQKSHLFEHQRIH 212 PF00096.16.fs: domain 2 of 17, from 246 to 268: score 30.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ ksnL +H+++H fk09522 246 YLCT-QCGKVFTLKSNLITHQKIH 268 PF00096.16.ls: domain 2 of 17, from 246 to 268: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ ksnL +H+++H fk09522 246 YLCT-QCGKVFTLKSNLITHQKIH 268 PF00096.16.fs: domain 3 of 17, from 274 to 296: score 34.2, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++s+L rHlr+H fk09522 274 YKCS-ECGKAFFQRSDLFRHLRIH 296 PF00096.16.ls: domain 3 of 17, from 274 to 296: score 36.2, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++s+L rHlr+H fk09522 274 YKCS-ECGKAFFQRSDLFRHLRIH 296 PF00096.16.fs: domain 4 of 17, from 302 to 324: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fs++s+L H++tH fk09522 302 YECS-ECGKGFSQNSDLSIHQKTH 324 PF00096.16.ls: domain 4 of 17, from 302 to 324: score 37.2, E = 5.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fs++s+L H++tH fk09522 302 YECS-ECGKGFSQNSDLSIHQKTH 324 PF00096.16.fs: domain 5 of 17, from 330 to 352: score 38.4, E = 2.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+rks L++H+r+H fk09522 330 YECN-ECGKAFTRKSALRMHQRIH 352 PF00096.16.ls: domain 5 of 17, from 330 to 352: score 40.4, E = 5.8e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+rks L++H+r+H fk09522 330 YECN-ECGKAFTRKSALRMHQRIH 352 PF00096.16.ls: domain 6 of 17, from 358 to 380: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+F +ks++++H+r+H fk09522 358 YVCA-DCGKAFIQKSHFNTHQRIH 380 PF00096.16.fs: domain 6 of 17, from 358 to 380: score 33.7, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+F +ks++++H+r+H fk09522 358 YVCA-DCGKAFIQKSHFNTHQRIH 380 PF00096.16.fs: domain 7 of 17, from 386 to 408: score 35.5, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF+ ks+L+ H+r+H fk09522 386 YECS-DCGKSFTKKSQLHVHQRIH 408 PF00096.16.ls: domain 7 of 17, from 386 to 408: score 37.5, E = 4.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF+ ks+L+ H+r+H fk09522 386 YECS-DCGKSFTKKSQLHVHQRIH 408 PF00096.16.ls: domain 8 of 17, from 414 to 436: score 37.3, E = 5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+++ nL++H++tH fk09522 414 YICT-ECGKVFTHRTNLTTHQKTH 436 PF00096.16.fs: domain 8 of 17, from 414 to 436: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+++ nL++H++tH fk09522 414 YICT-ECGKVFTHRTNLTTHQKTH 436 PF00096.16.ls: domain 9 of 17, from 442 to 464: score 39.7, E = 9e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++snL +H++tH fk09522 442 YMCA-ECGKAFTDQSNLIKHQKTH 464 PF00096.16.fs: domain 9 of 17, from 442 to 464: score 37.8, E = 3.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++snL +H++tH fk09522 442 YMCA-ECGKAFTDQSNLIKHQKTH 464 PF00096.16.ls: domain 10 of 17, from 470 to 492: score 33.0, E = 9.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ks Lk H+++H fk09522 470 YKCN-GCGKAFIWKSRLKIHQKSH 492 PF00096.16.fs: domain 10 of 17, from 470 to 492: score 31.0, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ks Lk H+++H fk09522 470 YKCN-GCGKAFIWKSRLKIHQKSH 492 PF00096.16.fs: domain 11 of 17, from 498 to 520: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F +ks+L H+r+H fk09522 498 YECK-DCGKAFIQKSTLSVHQRIH 520 PF00096.16.ls: domain 11 of 17, from 498 to 520: score 37.2, E = 5.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F +ks+L H+r+H fk09522 498 YECK-DCGKAFIQKSTLSVHQRIH 520 PF00096.16.ls: domain 12 of 17, from 526 to 548: score 35.2, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cgk+F +ks++ +H r+H fk09522 526 YVCP-ECGKAFIQKSHFIAHHRIH 548 PF00096.16.fs: domain 12 of 17, from 526 to 548: score 33.2, E = 5.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cgk+F +ks++ +H r+H fk09522 526 YVCP-ECGKAFIQKSHFIAHHRIH 548 PF00096.16.ls: domain 13 of 17, from 554 to 576: score 36.9, E = 6.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+ ks+L+ H+++H fk09522 554 YECS-DCGKCFTKKSQLRVHQKIH 576 PF00096.16.fs: domain 13 of 17, from 554 to 576: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+ ks+L+ H+++H fk09522 554 YECS-DCGKCFTKKSQLRVHQKIH 576 PF00096.16.ls: domain 15 of 17, from 610 to 632: score 35.0, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+F+ ks L+ H+++H fk09522 610 YECG-DCGKTFTWKSRLNIHQKSH 632 PF00096.16.fs: domain 15 of 17, from 610 to 632: score 33.0, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+F+ ks L+ H+++H fk09522 610 YECG-DCGKTFTWKSRLNIHQKSH 632 PF00096.16.fs: domain 16 of 17, from 638 to 660: score 30.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +k++L +H+ +H fk09522 638 YECS-KCGKAFIQKATLSMHQIIH 660 PF00096.16.ls: domain 16 of 17, from 638 to 660: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +k++L +H+ +H fk09522 638 YECS-KCGKAFIQKATLSMHQIIH 660 PF00096.16.fs: domain 17 of 17, from 666 to 688: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+k+F+++snL +H+++H fk09522 666 YACT-ECQKAFTDRSNLIKHQKMH 688 PF00096.16.ls: domain 17 of 17, from 666 to 688: score 36.7, E = 7.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+k+F+++snL +H+++H fk09522 666 YACT-ECQKAFTDRSNLIKHQKMH 688 //