hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-07252457/chunk_1/iprscan-20080811-07252457.nocrc
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Query sequence: fk09522
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 469.4   1.8e-136  17

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/17    190   212 ..     1    23 []    25.6    0.007
SM00355      2/17    246   268 ..     1    23 []    27.7   0.0016
SM00355      3/17    274   296 ..     1    23 []    32.8  4.8e-05
SM00355      4/17    302   324 ..     1    23 []    28.4  0.00096
SM00355      5/17    330   352 ..     1    23 []    33.3  3.3e-05
SM00355      6/17    358   380 ..     1    23 []    26.6   0.0034
SM00355      7/17    386   408 ..     1    23 []    29.1   0.0006
SM00355      8/17    414   436 ..     1    23 []    31.4  0.00012
SM00355      9/17    442   464 ..     1    23 []    29.9  0.00036
SM00355     10/17    470   492 ..     1    23 []    26.6   0.0035
SM00355     11/17    498   520 ..     1    23 []    27.8   0.0015
SM00355     12/17    526   548 ..     1    23 []    28.3   0.0011
SM00355     13/17    554   576 ..     1    23 []    29.3  0.00052
SM00355     14/17    582   604 ..     1    23 []     6.7       55
SM00355     15/17    610   632 ..     1    23 []    28.9  0.00068
SM00355     16/17    638   660 ..     1    23 []    26.1    0.005
SM00355     17/17    666   688 ..     1    23 []    30.8  0.00018

Alignments of top-scoring domains:
SM00355: domain 1 of 17, from 190 to 212: score 25.6, E = 0.007
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C + f++k++L +H+r+H   
     fk09522   190    YVCTE-CVMGFTQKsHLFEHQRIH    212  

SM00355: domain 2 of 17, from 246 to 268: score 27.7, E = 0.0016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f+ k++L+ H+++H   
     fk09522   246    YLCTQ-CGKVFTLKsNLITHQKIH    268  

SM00355: domain 3 of 17, from 274 to 296: score 32.8, E = 4.8e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f ++++L rH+r+H   
     fk09522   274    YKCSE-CGKAFFQRsDLFRHLRIH    296  

SM00355: domain 4 of 17, from 302 to 324: score 28.4, E = 0.00096
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L  H+++H   
     fk09522   302    YECSE-CGKGFSQNsDLSIHQKTH    324  

SM00355: domain 5 of 17, from 330 to 352: score 33.3, E = 3.3e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++k+aL+ H+r+H   
     fk09522   330    YECNE-CGKAFTRKsALRMHQRIH    352  

SM00355: domain 6 of 17, from 358 to 380: score 26.6, E = 0.0034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   Cgk f +k++++ H+r+H   
     fk09522   358    YVCAD-CGKAFIQKsHFNTHQRIH    380  

SM00355: domain 7 of 17, from 386 to 408: score 29.1, E = 0.0006
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgksf+ k++L  H+r+H   
     fk09522   386    YECSD-CGKSFTKKsQLHVHQRIH    408  

SM00355: domain 8 of 17, from 414 to 436: score 31.4, E = 0.00012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f+++++L+ H+++H   
     fk09522   414    YICTE-CGKVFTHRtNLTTHQKTH    436  

SM00355: domain 9 of 17, from 442 to 464: score 29.9, E = 0.00036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cgk f+++++L++H+++H   
     fk09522   442    YMCAE-CGKAFTDQsNLIKHQKTH    464  

SM00355: domain 10 of 17, from 470 to 492: score 26.6, E = 0.0035
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk f +k+ Lk H+++H   
     fk09522   470    YKCNG-CGKAFIWKsRLKIHQKSH    492  

SM00355: domain 11 of 17, from 498 to 520: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f +k+ L  H+r+H   
     fk09522   498    YECKD-CGKAFIQKsTLSVHQRIH    520  

SM00355: domain 12 of 17, from 526 to 548: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp+ Cgk f +k++++ H r+H   
     fk09522   526    YVCPE-CGKAFIQKsHFIAHHRIH    548  

SM00355: domain 13 of 17, from 554 to 576: score 29.3, E = 0.00052
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+f+ k++L+ H+++H   
     fk09522   554    YECSD-CGKCFTKKsQLRVHQKIH    576  

SM00355: domain 14 of 17, from 582 to 604: score 6.7, E = 55
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C +  gk f+++++L+ H+++H   
     fk09522   582    NICAE-YGKAFTDRsNLITHQKIH    604  

SM00355: domain 15 of 17, from 610 to 632: score 28.9, E = 0.00068
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   Cgk+f++k+ L+ H+++H   
     fk09522   610    YECGD-CGKTFTWKsRLNIHQKSH    632  

SM00355: domain 16 of 17, from 638 to 660: score 26.1, E = 0.005
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f +k  L  H+ +H   
     fk09522   638    YECSK-CGKAFIQKaTLSMHQIIH    660  

SM00355: domain 17 of 17, from 666 to 688: score 30.8, E = 0.00018
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+k f+++++L++H+++H   
     fk09522   666    YACTE-CQKAFTDRsNLIKHQKMH    688  

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