hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-07312823/chunk_1/iprscan-20080811-07312823.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk09723
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF01248.16.fs  Ribosomal protein L7Ae/L30e/S12e/Gadd4   107.6    4.5e-31   1
PF01248.16.ls  Ribosomal protein L7Ae/L30e/S12e/Gadd4   109.6    8.3e-30   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01248.16.fs    1/1     364   466 ..     1   101 []   107.6  4.5e-31
PF01248.16.ls    1/1     364   466 ..     1   101 []   109.6  8.3e-30

Alignments of top-scoring domains:
PF01248.16.fs: domain 1 of 1, from 364 to 466: score 107.6, E = 4.5e-31
                   *->daveellkkAlkagk.lvlGlkevtKalrrgeakLviiAedvspeek
                      d+++++ ++  k++++lvlGl+ev+K+l+ +++k+vii++++++++ 
     fk09723   364    DRMYQKDPVKAKTKRrLVLGLREVLKHLKLKKLKCVIISPNCEKIQS 410  

                   kk.id.TL..lealcklseknVPyvrvpSkeeLGrliGkkrpdvsalaik
                   k ++d+TL++++++++  e+n+P+v++ ++++LGr+++k +p vs+++i+
     fk09723   411 KGgLDdTLhtIIDYAC--EQNIPFVFALNRKALGRSLNKAVP-VSVVGIF 457  

                   dngdskdlv<-*
                    ++ ++d +   
     fk09723   458 SYDGAQDQF    466  

PF01248.16.ls: domain 1 of 1, from 364 to 466: score 109.6, E = 8.3e-30
                   *->daveellkkAlkagk.lvlGlkevtKalrrgeakLviiAedvspeek
                      d+++++ ++  k++++lvlGl+ev+K+l+ +++k+vii++++++++ 
     fk09723   364    DRMYQKDPVKAKTKRrLVLGLREVLKHLKLKKLKCVIISPNCEKIQS 410  

                   kk.id.TL..lealcklseknVPyvrvpSkeeLGrliGkkrpdvsalaik
                   k ++d+TL++++++++  e+n+P+v++ ++++LGr+++k +p vs+++i+
     fk09723   411 KGgLDdTLhtIIDYAC--EQNIPFVFALNRKALGRSLNKAVP-VSVVGIF 457  

                   dngdskdlv<-*
                    ++ ++d +   
     fk09723   458 SYDGAQDQF    466  

//