hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-07372305/chunk_1/iprscan-20080811-07372305.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk09725 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00435.11.ls Spectrin repeat 305.2 1.1e-88 4 PF00435.11.fs Spectrin repeat 297.4 5.6e-88 4 PF08726.1.fs Ca2+ insensitive EF hand 151.5 1.8e-45 1 PF08726.1.ls Ca2+ insensitive EF hand 153.4 5.3e-43 1 PF00036.22.ls EF hand 42.0 1.9e-09 2 PF00036.22.fs EF hand 38.0 2.6e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.fs 1/4 51 161 .. 1 111 [] 57.1 1.8e-16 PF00435.11.ls 1/4 51 161 .. 1 111 [] 59.1 1.4e-14 PF00435.11.fs 2/4 171 276 .. 1 111 [] 114.4 1.6e-33 PF00435.11.ls 2/4 171 276 .. 1 111 [] 116.3 7.9e-32 PF00435.11.fs 3/4 286 397 .. 1 111 [] 72.6 4.5e-21 PF00435.11.ls 3/4 286 397 .. 1 111 [] 74.5 3e-19 PF00435.11.fs 4/4 407 510 .. 1 111 [] 53.3 2.4e-15 PF00435.11.ls 4/4 407 510 .. 1 111 [] 55.2 2e-13 PF00036.22.ls 1/2 527 555 .. 1 29 [] 22.6 0.0013 PF00036.22.fs 1/2 527 555 .. 1 29 [] 20.6 0.00014 PF00036.22.fs 2/2 563 591 .. 1 29 [] 17.4 0.0011 PF08726.1.fs 1/1 594 660 .. 1 74 [] 151.5 1.8e-45 PF08726.1.ls 1/1 594 660 .. 1 74 [] 153.4 5.3e-43 Alignments of top-scoring domains: PF00435.11.fs: domain 1 of 4, from 51 to 161: score 57.1, E = 1.8e-16 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH l++++ r a++l++Wi+ + ++L + k+++++q l++++ + fk09725 51 RLMEEYERLASELLEWIRRTIPWLENRTP-EKTMQAMQKKLEDFrDY 96 kaleaelaa.hqdrvealninelaekLiideghyaseeiqerleeLnerW ++ ++ +++++++e + n+l+ kL+i++ + +++ ++++++ +W fk09725 97 RRKHKPPKVqEKCQLEINF-NTLQTKLRISNRPAFMPSEGKMVSDIAGAW 145 eqLlelaaeRkqkLee<-* ++L+++ + +++L++ fk09725 146 QRLEQAEKGYEEWLLN 161 PF00435.11.ls: domain 1 of 4, from 51 to 161: score 59.1, E = 1.4e-14 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH l++++ r a++l++Wi+ + ++L + k+++++q l++++ + fk09725 51 RLMEEYERLASELLEWIRRTIPWLENRTP-EKTMQAMQKKLEDFrDY 96 kaleaelaa.hqdrvealninelaekLiideghyaseeiqerleeLnerW ++ ++ +++++++e + n+l+ kL+i++ + +++ ++++++ +W fk09725 97 RRKHKPPKVqEKCQLEINF-NTLQTKLRISNRPAFMPSEGKMVSDIAGAW 145 eqLlelaaeRkqkLee<-* ++L+++ + +++L++ fk09725 146 QRLEQAEKGYEEWLLN 161 PF00435.11.fs: domain 2 of 4, from 171 to 276: score 114.4, E = 1.6e-33 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk +l+++F ++a+ +e W +ke++L + dye +l+ev+aLl+ kH+ fk09725 171 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLR--KHE 215 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq a+e +laahqdrve++ ++a++L + ++++ ++ +r++ ++++W++ fk09725 216 AFESDLAAHQDRVEQIA--AIAQEL-NELDYHDAVNVNDRCQKICDQWDR 262 LlelaaeRkqkLee<-* L +l++ R+++Le+ fk09725 263 LGTLTQKRREALER 276 PF00435.11.ls: domain 2 of 4, from 171 to 276: score 116.3, E = 7.9e-32 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk +l+++F ++a+ +e W +ke++L + dye +l+ev+aLl+ kH+ fk09725 171 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLR--KHE 215 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq a+e +laahqdrve++ ++a++L + ++++ ++ +r++ ++++W++ fk09725 216 AFESDLAAHQDRVEQIA--AIAQEL-NELDYHDAVNVNDRCQKICDQWDR 262 LlelaaeRkqkLee<-* L +l++ R+++Le+ fk09725 263 LGTLTQKRREALER 276 PF00435.11.fs: domain 3 of 4, from 286 to 397: score 72.6, E = 4.5e-21 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk +l +F++ a+ +++W+e++++ L+++ + +++ee+q+L H+ fk09725 286 QLHLEFAKRAAPFNNWMEGAMEDLQDMFI-VHSIEEIQSLIT--AHE 329 aleaelaahqdrvealn.i.nelaekLiideg...hyaseeiqerleeLn +++a l ++ +++ i+ne+ + + ++++ + ++++ + +++eL+ fk09725 330 QFKATLPEADGERQSIMaIqNEVEKVI-QSYNiriSSSNPYSTVTMDELR 378 erWeqLlelaaeRkqkLee<-* ++W+++++l+ R q L+e fk09725 379 TKWDKVKQLVPIRDQSLQE 397 PF00435.11.ls: domain 3 of 4, from 286 to 397: score 74.5, E = 3e-19 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk +l +F++ a+ +++W+e++++ L+++ + +++ee+q+L H+ fk09725 286 QLHLEFAKRAAPFNNWMEGAMEDLQDMFI-VHSIEEIQSLIT--AHE 329 aleaelaahqdrvealn.i.nelaekLiideg...hyaseeiqerleeLn +++a l ++ +++ i+ne+ + + ++++ + ++++ + +++eL+ fk09725 330 QFKATLPEADGERQSIMaIqNEVEKVI-QSYNiriSSSNPYSTVTMDELR 378 erWeqLlelaaeRkqkLee<-* ++W+++++l+ R q L+e fk09725 379 TKWDKVKQLVPIRDQSLQE 397 PF00435.11.fs: domain 4 of 4, from 407 to 510: score 53.3, E = 2.4e-15 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkql.k l +qF+ +a+ + Wi+ k e+++ +++ + aL +q+++ fk09725 407 RLRRQFAAQANAIGPWIQNKmEEIA------RSSIQITGALEDQMnQ 447 Hkaleaelaahqdrvealn.i.nelaekLiideghyaseeiqerleeLne +k++e+ + +++ ++++l+++++ ++e+L++d+ +++ +++e+++ fk09725 448 LKQYEHNIINYKNNIDKLEgDhQLIQEALVFDN-----KHTNYTMEHIRV 492 rWeqLlelaaeRkqkLee<-* We Ll+ +a+ ++ e fk09725 493 GWELLLTTIARTINEVET 510 PF00435.11.ls: domain 4 of 4, from 407 to 510: score 55.2, E = 2e-13 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkql.k l +qF+ +a+ + Wi+ k e+++ +++ + aL +q+++ fk09725 407 RLRRQFAAQANAIGPWIQNKmEEIA------RSSIQITGALEDQMnQ 447 Hkaleaelaahqdrvealn.i.nelaekLiideghyaseeiqerleeLne +k++e+ + +++ ++++l+++++ ++e+L++d+ +++ +++e+++ fk09725 448 LKQYEHNIINYKNNIDKLEgDhQLIQEALVFDN-----KHTNYTMEHIRV 492 rWeqLlelaaeRkqkLee<-* We Ll+ +a+ ++ e fk09725 493 GWELLLTTIARTINEVET 510 PF00036.22.ls: domain 1 of 2, from 527 to 555: score 22.6, E = 0.0013 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+++ F++fD+ ++G + e+f+a+l ++ fk09725 527 EFRASFNHFDRRKNGLMDHEDFRACLISM 555 PF00036.22.fs: domain 1 of 2, from 527 to 555: score 20.6, E = 0.00014 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+++ F++fD+ ++G + e+f+a+l ++ fk09725 527 EFRASFNHFDRRKNGLMDHEDFRACLISM 555 PF00036.22.fs: domain 2 of 2, from 563 to 591: score 17.4, E = 0.0011 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+ +++ ++D +g G+++f+ f++++++ fk09725 563 EFARIMTLVDPNGQGTVTFQSFIDFMTRE 591 PF08726.1.fs: domain 1 of 1, from 594 to 660: score 151.5, E = 1.8e-45 *->DtdTaEQViqSFrilAgDKpYiTeedLRreLpPdqaIeYciqrMppy DtdTaEQVi+SFrilA+DKpYi++e+LRreLpPdqa +Yci+rMp+y fk09725 594 DTDTAEQVIASFRILASDKPYILAEELRRELPPDQA-QYCIKRMPAY 639 rvkGpdaveGrdlPalDYeSFstaLyg<-* +Gp++v+G alDY +Fs+aLyg fk09725 640 --SGPGSVPG----ALDYAAFSSALYG 660 PF08726.1.ls: domain 1 of 1, from 594 to 660: score 153.4, E = 5.3e-43 *->DtdTaEQViqSFrilAgDKpYiTeedLRreLpPdqaIeYciqrMppy DtdTaEQVi+SFrilA+DKpYi++e+LRreLpPdqa +Yci+rMp+y fk09725 594 DTDTAEQVIASFRILASDKPYILAEELRRELPPDQA-QYCIKRMPAY 639 rvkGpdaveGrdlPalDYeSFstaLyg<-* +Gp++v+G alDY +Fs+aLyg fk09725 640 --SGPGSVPG----ALDYAAFSSALYG 660 //