hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12410119/chunk_1/iprscan-20090618-12410119.nocrc
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Query sequence: fk09741
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00373.8.fs FERM domain (Band 4.1 family)                  340.4   3.4e-106   1
PF00373.8.ls FERM domain (Band 4.1 family)                  342.2   7.9e-100   1
PF05902.3.fs 4.1 protein C-terminal domain (CTD)            135.8    3.3e-39   1
PF05902.3.ls 4.1 protein C-terminal domain (CTD)            123.3    6.3e-34   1
PF08736.1.fs FERM adjacent (FA)                              81.9    1.5e-22   1
PF08736.1.ls FERM adjacent (FA)                              83.8    4.9e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00373.8.fs   1/1     223   412 ..     1   210 []   340.4 3.4e-106
PF00373.8.ls   1/1     223   412 ..     1   210 []   342.2 7.9e-100
PF08736.1.ls   1/1     507   553 ..     1    50 []    83.8  4.9e-22
PF08736.1.fs   1/1     507   553 ..     1    50 []    81.9  1.5e-22
PF05902.3.ls   1/1     562   670 ..     1   114 []   123.3  6.3e-34
PF05902.3.fs   1/1     614   670 ..    58   114 .]   135.8  3.3e-39

Alignments of top-scoring domains:
PF00373.8.fs: domain 1 of 1, from 223 to 412: score 340.4, E = 3.4e-106
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c+vtllD+t + +  eK++kGqvL+dkV++hL+l+EkdYFGL ++  
     fk09741   223    CKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQE- 268  

                   DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT
                      s  +++WLdp+K+i+ Q   +  P+ ++F+vKFYp+D p +L+++iT
     fk09741   269 ---SPEQKNWLDPAKEIKRQ--LRNLPWLFTFNVKFYPPD-PSQLTEDIT 312  

                   rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC
                   ry ++LQ++qdI +GrlpC+f t +LL+SY+ Q+e+GDY++++H++    
     fk09741   313 RYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSI--- 359  

                   LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk
                      Ls + ++P       q  ++++Eek+aelHk HrG+sp++A++ +L+
     fk09741   360 --DLSEFQFAP------TQ--TKELEEKVAELHKTHRGLSPAQADSQFLE 399  

                   iArdLemYGVdff<-*
                   +A++L+mYGVd++   
     fk09741   400 NAKRLSMYGVDLH    412  

PF00373.8.ls: domain 1 of 1, from 223 to 412: score 342.2, E = 7.9e-100
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c+vtllD+t + +  eK++kGqvL+dkV++hL+l+EkdYFGL ++  
     fk09741   223    CKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQE- 268  

                   DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT
                      s  +++WLdp+K+i+ Q   +  P+ ++F+vKFYp+D p +L+++iT
     fk09741   269 ---SPEQKNWLDPAKEIKRQ--LRNLPWLFTFNVKFYPPD-PSQLTEDIT 312  

                   rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC
                   ry ++LQ++qdI +GrlpC+f t +LL+SY+ Q+e+GDY++++H++    
     fk09741   313 RYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSI--- 359  

                   LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk
                      Ls + ++P       q  ++++Eek+aelHk HrG+sp++A++ +L+
     fk09741   360 --DLSEFQFAP------TQ--TKELEEKVAELHKTHRGLSPAQADSQFLE 399  

                   iArdLemYGVdff<-*
                   +A++L+mYGVd++   
     fk09741   400 NAKRLSMYGVDLH    412  

PF08736.1.ls: domain 1 of 1, from 507 to 553: score 83.8, E = 4.9e-22
                   *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas
                      p++kF+ +lGSkFRYSGRTq+Qt++as  i+R++p+FeR++Skr  +
     fk09741   507    PKAKFL-TLGSKFRYSGRTQAQTRQASTLIDRPAPHFERTSSKR--V 550  

                   rrs<-*
                   +rs   
     fk09741   551 SRS    553  

PF08736.1.fs: domain 1 of 1, from 507 to 553: score 81.9, E = 1.5e-22
                   *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas
                      p++kF+ +lGSkFRYSGRTq+Qt++as  i+R++p+FeR++Skr  +
     fk09741   507    PKAKFL-TLGSKFRYSGRTQAQTRQASTLIDRPAPHFERTSSKR--V 550  

                   rrs<-*
                   +rs   
     fk09741   551 SRS    553  

PF05902.3.ls: domain 1 of 1, from 562 to 670: score 123.3, E = 6.3e-34
                   *->keeistksVpivnrevkTiTYesaqvDdgadldpGvLltaqtiTsEt
                            k+ p    e+  + Y       g +l +  ++       E 
     fk09741   562    MDQSLMKDFPGAAGEI--SAY-------GPGLVSIAVVQDGDGRREV 599  

                   lSttTTThiT....KTvkgGisETriEkrivItgDgDiDhDqaLaqAIkE
                    S t   h+   ++KTvkgGisETriEkrivItgDgDiDhDqaLaqAI+E
     fk09741   600 RSPTKAPHLQliegKTVKGGISETRIEKRIVITGDGDIDHDQALAQAIRE 649  

                   AkeqhPDMsVtKvvVhqeTei<-*
                   A+eqhPDMsVt+vvVh+eTe+   
     fk09741   650 AREQHPDMSVTRVVVHKETEL    670  

PF05902.3.fs: domain 1 of 1, from 614 to 670: score 135.8, E = 3.3e-39
                   *->KTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAkeqhPDMsVt
                      KTvkgGisETriEkrivItgDgDiDhDqaLaqAI+EA+eqhPDMsVt
     fk09741   614    KTVKGGISETRIEKRIVITGDGDIDHDQALAQAIREAREQHPDMSVT 660  

                   KvvVhqeTei<-*
                   +vvVh+eTe+   
     fk09741   661 RVVVHKETEL    670  

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