hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-07494014/chunk_1/iprscan-20080811-07494014.nocrc
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Query sequence: fk09742
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF02752.12.ls Arrestin (or S-antigen), C-terminal domain   116.2    8.7e-32   1
PF02752.12.fs Arrestin (or S-antigen), C-terminal domain   114.4    2.9e-31   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF02752.12.fs   1/1      51   175 ..     1   172 []   114.4  2.9e-31
PF02752.12.ls   1/1      51   175 ..     1   172 []   116.2  8.7e-32

Alignments of top-scoring domains:
PF02752.12.fs: domain 1 of 1, from 51 to 175: score 114.4, E = 2.9e-31
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      ++g + l++s++ +gYv G+ ++ +++++N+S k+   + asL Q v
     fk09742    51    KTGSVVLTASTDLRGYVVGQALQLHADVENQSGKDTSPVVASLLQKV 97   

                   tyvaysnakykktVaeeeeegsgcpvapgssglskvkklepllvankekg
                   +y a++                              +  + + +a+ e+ 
     fk09742    98 SYKAKR------------------------------WIHDVRTIAEVEGA 117  

                   gvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVklsl
                   gv+++ + +++ +++   l+P+++++  +l +c +  I+++Y+l+V l+ 
     fk09742   118 GVKAWRRAQWH-EQI---LVPALPQS--ALPGCSL--IHIDYYLQVSLKA 159  

                   sgglgdglgselklelPitigtvpp<-*
                   +         e +++lP++ig++     
     fk09742   160 P---------EATVTLPVFIGNIAV    175  

PF02752.12.ls: domain 1 of 1, from 51 to 175: score 116.2, E = 8.7e-32
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      ++g + l++s++ +gYv G+ ++ +++++N+S k+   + asL Q v
     fk09742    51    KTGSVVLTASTDLRGYVVGQALQLHADVENQSGKDTSPVVASLLQKV 97   

                   tyvaysnakykktVaeeeeegsgcpvapgssglskvkklepllvankekg
                   +y a++                              +  + + +a+ e+ 
     fk09742    98 SYKAKR------------------------------WIHDVRTIAEVEGA 117  

                   gvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVklsl
                   gv+++ + +++ +++   l+P+++++  +l +c +  I+++Y+l+V l+ 
     fk09742   118 GVKAWRRAQWH-EQI---LVPALPQS--ALPGCSL--IHIDYYLQVSLKA 159  

                   sgglgdglgselklelPitigtvpp<-*
                   +         e +++lP++ig++     
     fk09742   160 P---------EATVTLPVFIGNIAV    175  

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