hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-08182669/chunk_1/iprscan-20080811-08182669.nocrc
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Query sequence: fk09872
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF01275.9.fs Myelin proteolipid protein (PLP or lipophi   663.2   8.6e-199   1
PF01275.9.ls Myelin proteolipid protein (PLP or lipophi   665.1   5.1e-197   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF01275.9.fs   1/1      13   257 ..     1   288 []   663.2 8.6e-199
PF01275.9.ls   1/1      13   257 ..     1   288 []   665.1 5.1e-197

Alignments of top-scoring domains:
PF01275.9.fs: domain 1 of 1, from 13 to 257: score 663.2, E = 8.6e-199
                   *->GcfECCIrCLGGVPYASLvATiLCFaGVALFCGCGHEALtgTekliE
                      GcfECCI+CLGGVPYASLvATiLCF+GVALFCGCGH+AL+gT++++E
     fk09872    13    GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILE 59   

                   tYFsvvrnaqDyvlLinvIqaFqYVIYGvAsFFFLYGILLLAEGFYTTsA
                   ++Fs  +na+D++lL++vIq++qYVIYG+AsFFFLYGI+LLAEGFYTTsA
     fk09872    60 QHFS--TNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSA 107  

                   VKelfGEFKttiikkGLisTvTvCGpKGRssRGrqqvHslElvCRClSKW
                   VKel+GEFK           +T+CG                   RC+S  
     fk09872   108 VKELHGEFK-----------TTACG-------------------RCIS-- 125  

                   LGHPgtFvflTYvLgvaWLgVFAFSAvPsssVfIYfniWttCqsitsptk
                       g+FvflTYvLgvaWLgVF+FSAvP   Vf+++niW+tC++i+sp+ 
     fk09872   126 ----GMFVFLTYVLGVAWLGVFGFSAVP---VFMFYNIWSTCEVIKSPQT 168  

                   tlttsvediCvDaRqYGilPWNAfPGKvCGsnetLasICkTsEFqmTyHL
                   ++tt+ve+iCvD RqYGi+PWNAfPGK+CGs  +L++IC+T+EF+m+yHL
     fk09872   169 NGTTGVEQICVDIRQYGIIPWNAFPGKICGS--ALENICNTNEFYMSYHL 216  

                   FIaAfAGAgATviALltYmmaltyNyAVLKflgRkdkytkf<-*
                   FI+A+AGAgATviAL++++m+l++N+A+LK+++++++y+++   
     fk09872   217 FIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQDI    257  

PF01275.9.ls: domain 1 of 1, from 13 to 257: score 665.1, E = 5.1e-197
                   *->GcfECCIrCLGGVPYASLvATiLCFaGVALFCGCGHEALtgTekliE
                      GcfECCI+CLGGVPYASLvATiLCF+GVALFCGCGH+AL+gT++++E
     fk09872    13    GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILE 59   

                   tYFsvvrnaqDyvlLinvIqaFqYVIYGvAsFFFLYGILLLAEGFYTTsA
                   ++Fs  +na+D++lL++vIq++qYVIYG+AsFFFLYGI+LLAEGFYTTsA
     fk09872    60 QHFS--TNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSA 107  

                   VKelfGEFKttiikkGLisTvTvCGpKGRssRGrqqvHslElvCRClSKW
                   VKel+GEFK           +T+CG                   RC+S  
     fk09872   108 VKELHGEFK-----------TTACG-------------------RCIS-- 125  

                   LGHPgtFvflTYvLgvaWLgVFAFSAvPsssVfIYfniWttCqsitsptk
                       g+FvflTYvLgvaWLgVF+FSAvP   Vf+++niW+tC++i+sp+ 
     fk09872   126 ----GMFVFLTYVLGVAWLGVFGFSAVP---VFMFYNIWSTCEVIKSPQT 168  

                   tlttsvediCvDaRqYGilPWNAfPGKvCGsnetLasICkTsEFqmTyHL
                   ++tt+ve+iCvD RqYGi+PWNAfPGK+CGs  +L++IC+T+EF+m+yHL
     fk09872   169 NGTTGVEQICVDIRQYGIIPWNAFPGKICGS--ALENICNTNEFYMSYHL 216  

                   FIaAfAGAgATviALltYmmaltyNyAVLKflgRkdkytkf<-*
                   FI+A+AGAgATviAL++++m+l++N+A+LK+++++++y+++   
     fk09872   217 FIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQDI    257  

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