hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-08182669/chunk_1/iprscan-20080811-08182669.nocrc
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Query sequence: fk09872
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00002                                                 158.5    6.7e-43   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00002      1/1     155   215 ..     1    63 []   158.5  6.7e-43

Alignments of top-scoring domains:
SM00002: domain 1 of 1, from 155 to 215: score 158.5, E = 6.7e-43
                   *->NiWttCqsitsptktlttsiedlCvDaRQYGIlPWNAfPGKvCGssE
                      NiW+tC++i+sp++++tt++e++CvD+RQYGI+PWNAfPGK+CGs  
     fk09872   155    NIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGS-- 199  

                   nLlsiCkTsEFnmTfH<-*
                   +L++iC+T+EF+m++H   
     fk09872   200 ALENICNTNEFYMSYH    215  

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