hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-08235010/chunk_1/iprscan-20080811-08235010.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk09916 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03727.6.ls Hexokinase 1098.8 0 2 PF03727.6.fs Hexokinase 1094.9 0 2 PF00349.11.fs Hexokinase 926.2 1e-290 2 PF00349.11.ls Hexokinase 930.1 8.6e-277 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00349.11.fs 1/2 48 253 .. 1 233 [] 452.5 5.1e-142 PF00349.11.ls 1/2 48 253 .. 1 233 [] 454.5 1.3e-133 PF03727.6.fs 1/2 255 494 .. 1 259 [] 539.3 3.8e-159 PF03727.6.ls 1/2 255 494 .. 1 259 [] 541.2 1e-159 PF00349.11.fs 2/2 496 701 .. 1 233 [] 473.6 1.2e-148 PF00349.11.ls 2/2 496 701 .. 1 233 [] 475.6 5.6e-140 PF03727.6.fs 2/2 703 942 .. 1 259 [] 555.7 4.4e-164 PF03727.6.ls 2/2 703 942 .. 1 259 [] 557.6 1.2e-164 Alignments of top-scoring domains: PF00349.11.fs: domain 1 of 2, from 48 to 253: score 452.5, E = 5.1e-142 *->aelsqavdellaqFrvstEtLrevvkrFikemeKGLsahkeggnlAs +++++++d++l+ +r+s+EtL +++ rF+kem++GLs ++++++A+ fk09916 48 DDQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLS--RDFNPTAT 92 PHeksvkMlPtfVrstPdGtEkGdFLALDLGGTNfRVllVklggngegWk vkMlPtfVrs+PdG+EkGdF+ALDLGG++fR+l+V++++++++ fk09916 93 -----VKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQ-N 136 vemtqskYrlPFtGYHeelmtgtgvTaeqLFDfiAeCikdFmdeqgpddl v+m++++Y+ P e++++g+g +qLFD++AeC+ dFm++ ++ fk09916 137 VHMESEVYDTP-----ENIVHGSG---SQLFDHVAECLGDFMEKRKI--- 175 akGkkekLpLGFTFSFPcsQtsIdegiLirWTKGFkiGRAtnsgvEGhDV k++kLp+GFTFSFPc+Q +Ide+iLi+WTK+Fk+ sgvEG DV fk09916 176 ---KDKKLPVGFTFSFPCQQSKIDEAILITWTKRFKA-----SGVEGADV 217 VpLLreAIkrrgipdidVVAvvNDTVGTlmscaYtd<-* V+LL++AIk+rg++d+++VAvvNDTVGT+m+c+Y+d fk09916 218 VKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDD 253 PF00349.11.ls: domain 1 of 2, from 48 to 253: score 454.5, E = 1.3e-133 *->aelsqavdellaqFrvstEtLrevvkrFikemeKGLsahkeggnlAs +++++++d++l+ +r+s+EtL +++ rF+kem++GLs ++++++A+ fk09916 48 DDQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLS--RDFNPTAT 92 PHeksvkMlPtfVrstPdGtEkGdFLALDLGGTNfRVllVklggngegWk vkMlPtfVrs+PdG+EkGdF+ALDLGG++fR+l+V++++++++ fk09916 93 -----VKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQVNHEKNQ-N 136 vemtqskYrlPFtGYHeelmtgtgvTaeqLFDfiAeCikdFmdeqgpddl v+m++++Y+ P e++++g+g +qLFD++AeC+ dFm++ ++ fk09916 137 VHMESEVYDTP-----ENIVHGSG---SQLFDHVAECLGDFMEKRKI--- 175 akGkkekLpLGFTFSFPcsQtsIdegiLirWTKGFkiGRAtnsgvEGhDV k++kLp+GFTFSFPc+Q +Ide+iLi+WTK+Fk+ sgvEG DV fk09916 176 ---KDKKLPVGFTFSFPCQQSKIDEAILITWTKRFKA-----SGVEGADV 217 VpLLreAIkrrgipdidVVAvvNDTVGTlmscaYtd<-* V+LL++AIk+rg++d+++VAvvNDTVGT+m+c+Y+d fk09916 218 VKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDD 253 PF03727.6.fs: domain 1 of 2, from 255 to 494: score 539.3, E = 3.8e-159 *->eceiGlIvGTGtNaCYmEemrnIekleGkLkdDipKedegrMcINmE +ce+GlI+GTGtNaCYmEe+r+I+++eG degrMcIN+E fk09916 255 HCEVGLIIGTGTNACYMEELRHIDLVEG---------DEGRMCINTE 292 WGaFGDnghldlprTkYDvviDeeSpNPGqQlFEKMISGmYLGEivRliL WGaFGD+g+l+++rT++D++iD++S+NPG+QlFEKM+SGmYLGE+vRliL fk09916 293 WGAFGDDGSLEDIRTEFDREIDRGSLNPGKQLFEKMVSGMYLGELVRLIL 342 ldLakeGlLFkGqdspkLktpgsfeTsvlSrIEsDpsenledvraiLqta +++akeGlLF+G+++p+L+t+g+f+Ts++S+IE+ +e+l+++++iL++ fk09916 343 VKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKN-KEGLHNAKEILTR- 390 LgletTdeerklvrrvCeaVstRAArLcaaglAAilkkirenrgrerlkv Lg+e++d++++ v++vC++Vs+R+A+L+aa+l+Ail+++r+n+g++rl++ fk09916 391 LGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRLRDNKGTPRLRT 440 tvGvDGSVYkkyPgFkerlRhaeaLrdLlpetekecdkpvsiipAEDGSG tvGvDGS+Yk++P++++r+ +++Lr+L+p+ +d v+++ +E GSG fk09916 441 TVGVDGSLYKTHPQYSRRF--HKTLRRLVPD----SD--VRFLLSESGSG 482 kGAAlvaAVaak<-* kGAA+v+AVa++ fk09916 483 KGAAMVTAVAYR 494 PF03727.6.ls: domain 1 of 2, from 255 to 494: score 541.2, E = 1e-159 *->eceiGlIvGTGtNaCYmEemrnIekleGkLkdDipKedegrMcINmE +ce+GlI+GTGtNaCYmEe+r+I+++eG degrMcIN+E fk09916 255 HCEVGLIIGTGTNACYMEELRHIDLVEG---------DEGRMCINTE 292 WGaFGDnghldlprTkYDvviDeeSpNPGqQlFEKMISGmYLGEivRliL WGaFGD+g+l+++rT++D++iD++S+NPG+QlFEKM+SGmYLGE+vRliL fk09916 293 WGAFGDDGSLEDIRTEFDREIDRGSLNPGKQLFEKMVSGMYLGELVRLIL 342 ldLakeGlLFkGqdspkLktpgsfeTsvlSrIEsDpsenledvraiLqta +++akeGlLF+G+++p+L+t+g+f+Ts++S+IE+ +e+l+++++iL++ fk09916 343 VKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKN-KEGLHNAKEILTR- 390 LgletTdeerklvrrvCeaVstRAArLcaaglAAilkkirenrgrerlkv Lg+e++d++++ v++vC++Vs+R+A+L+aa+l+Ail+++r+n+g++rl++ fk09916 391 LGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRLRDNKGTPRLRT 440 tvGvDGSVYkkyPgFkerlRhaeaLrdLlpetekecdkpvsiipAEDGSG tvGvDGS+Yk++P++++r+ +++Lr+L+p+ +d v+++ +E GSG fk09916 441 TVGVDGSLYKTHPQYSRRF--HKTLRRLVPD----SD--VRFLLSESGSG 482 kGAAlvaAVaak<-* kGAA+v+AVa++ fk09916 483 KGAAMVTAVAYR 494 PF00349.11.fs: domain 2 of 2, from 496 to 701: score 473.6, E = 1.2e-148 *->aelsqavdellaqFrvstEtLrevvkrFikemeKGLsahkeggnlAs ae++++++e+la+F ++++ L+ev+kr++ eme GL+ k+++n+A fk09916 496 AEQHRQIEETLAHFHLTKDMLLEVKKRMRAEMELGLR--KQTHNNAV 540 PHeksvkMlPtfVrstPdGtEkGdFLALDLGGTNfRVllVklggngegWk vkMlP+fVr tPdGtE GdFLALDLGGTNfRVllVk++ ++++ + fk09916 541 -----VKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIRSGKKR-T 584 vemtqskYrlPFtGYHeelmtgtgvTaeqLFDfiAeCikdFmdeqgpddl vem++++Y++P e+m+gtg e+LFD+i+ Ci+dF+d++g+ fk09916 585 VEMHNKIYAIP-----IEIMQGTG---EELFDHIVSCISDFLDYMGI--- 623 akGkkekLpLGFTFSFPcsQtsIdegiLirWTKGFkiGRAtnsgvEGhDV k+ ++pLGFTFSFPc+Qts+d giLi+WTKGFk+ ++++GhDV fk09916 624 ---KGPRMPLGFTFSFPCQQTSLDAGILITWTKGFKA-----TDCVGHDV 665 VpLLreAIkrrgipdidVVAvvNDTVGTlmscaYtd<-* V+LLr+AIkrr+++d+dVVAvvNDTVGT+m+caY++ fk09916 666 VTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEE 701 PF00349.11.ls: domain 2 of 2, from 496 to 701: score 475.6, E = 5.6e-140 *->aelsqavdellaqFrvstEtLrevvkrFikemeKGLsahkeggnlAs ae++++++e+la+F ++++ L+ev+kr++ eme GL+ k+++n+A fk09916 496 AEQHRQIEETLAHFHLTKDMLLEVKKRMRAEMELGLR--KQTHNNAV 540 PHeksvkMlPtfVrstPdGtEkGdFLALDLGGTNfRVllVklggngegWk vkMlP+fVr tPdGtE GdFLALDLGGTNfRVllVk++ ++++ + fk09916 541 -----VKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIRSGKKR-T 584 vemtqskYrlPFtGYHeelmtgtgvTaeqLFDfiAeCikdFmdeqgpddl vem++++Y++P e+m+gtg e+LFD+i+ Ci+dF+d++g+ fk09916 585 VEMHNKIYAIP-----IEIMQGTG---EELFDHIVSCISDFLDYMGI--- 623 akGkkekLpLGFTFSFPcsQtsIdegiLirWTKGFkiGRAtnsgvEGhDV k+ ++pLGFTFSFPc+Qts+d giLi+WTKGFk+ ++++GhDV fk09916 624 ---KGPRMPLGFTFSFPCQQTSLDAGILITWTKGFKA-----TDCVGHDV 665 VpLLreAIkrrgipdidVVAvvNDTVGTlmscaYtd<-* V+LLr+AIkrr+++d+dVVAvvNDTVGT+m+caY++ fk09916 666 VTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEE 701 PF03727.6.fs: domain 2 of 2, from 703 to 942: score 555.7, E = 4.4e-164 *->eceiGlIvGTGtNaCYmEemrnIekleGkLkdDipKedegrMcINmE ce+GlIvGTG+NaCYmEem+n+e++eG d+g+McINmE fk09916 703 TCEVGLIVGTGSNACYMEEMKNVEMVEG---------DQGQMCINME 740 WGaFGDnghldlprTkYDvviDeeSpNPGqQlFEKMISGmYLGEivRliL WGaFGDng+ld++rT YD+++De+S+N+G+Q++EKMISGmYLGEivR+iL fk09916 741 WGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRNIL 790 ldLakeGlLFkGqdspkLktpgsfeTsvlSrIEsDpsenledvraiLqta +d++k+G+LF+Gq+s+ Lkt+g+feT++lS+IEsD +++l +vraiLq+ fk09916 791 IDFTKKGFLFRGQISETLKTRGIFETKFLSQIESD-RLALLQVRAILQQ- 838 LgletTdeerklvrrvCeaVstRAArLcaaglAAilkkirenrgrerlkv Lgl++T+++++lv+ vC +Vs+RAA+Lc+ag+AA+++kirenrg++rl+v fk09916 839 LGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNV 888 tvGvDGSVYkkyPgFkerlRhaeaLrdLlpetekecdkpvsiipAEDGSG tvGvDG++Yk++P+F++++ ++++++L p+ c+ vs++ +EDGSG fk09916 889 TVGVDGTLYKLHPHFSRIM--HQTVKELSPK----CN--VSFLLSEDGSG 930 kGAAlvaAVaak<-* kGAAl++AV ++ fk09916 931 KGAALITAVGVR 942 PF03727.6.ls: domain 2 of 2, from 703 to 942: score 557.6, E = 1.2e-164 *->eceiGlIvGTGtNaCYmEemrnIekleGkLkdDipKedegrMcINmE ce+GlIvGTG+NaCYmEem+n+e++eG d+g+McINmE fk09916 703 TCEVGLIVGTGSNACYMEEMKNVEMVEG---------DQGQMCINME 740 WGaFGDnghldlprTkYDvviDeeSpNPGqQlFEKMISGmYLGEivRliL WGaFGDng+ld++rT YD+++De+S+N+G+Q++EKMISGmYLGEivR+iL fk09916 741 WGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRNIL 790 ldLakeGlLFkGqdspkLktpgsfeTsvlSrIEsDpsenledvraiLqta +d++k+G+LF+Gq+s+ Lkt+g+feT++lS+IEsD +++l +vraiLq+ fk09916 791 IDFTKKGFLFRGQISETLKTRGIFETKFLSQIESD-RLALLQVRAILQQ- 838 LgletTdeerklvrrvCeaVstRAArLcaaglAAilkkirenrgrerlkv Lgl++T+++++lv+ vC +Vs+RAA+Lc+ag+AA+++kirenrg++rl+v fk09916 839 LGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNV 888 tvGvDGSVYkkyPgFkerlRhaeaLrdLlpetekecdkpvsiipAEDGSG tvGvDG++Yk++P+F++++ ++++++L p+ c+ vs++ +EDGSG fk09916 889 TVGVDGTLYKLHPHFSRIM--HQTVKELSPK----CN--VSFLLSEDGSG 930 kGAAlvaAVaak<-* kGAAl++AV ++ fk09916 931 KGAALITAVGVR 942 //