# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk09943.fasta.nr -Q fk09943.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk09943, 467 aa vs /cdna2/lib/nr/nr library 3020366983 residues in 8842601 sequences statistics sampled from 60000 to 8830293 sequences Expectation_n fit: rho(ln(x))= 5.7888+/-0.000191; mu= 9.0264+/- 0.011 mean_var=86.7926+/-17.284, 0's: 27 Z-trim: 91 B-trim: 3005 in 1/64 Lambda= 0.137668 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8842601) gi|41019529|sp|O75351.2|VPS4B_HUMAN RecName: Full= ( 444) 2915 588.6 1.2e-165 gi|75070512|sp|Q5R658.1|VPS4B_PONAB RecName: Full= ( 444) 2905 586.7 4.6e-165 gi|158255300|dbj|BAF83621.1| unnamed protein produ ( 444) 2905 586.7 4.6e-165 gi|3329390|gb|AAC39874.1| SKD1 homolog [Homo sapie ( 444) 2903 586.3 6e-165 gi|158255942|dbj|BAF83942.1| unnamed protein produ ( 444) 2897 585.1 1.4e-164 gi|122143535|sp|Q0VD48.1|VPS4B_BOVIN RecName: Full ( 444) 2825 570.8 2.8e-160 gi|73945429|ref|XP_848812.1| PREDICTED: similar to ( 444) 2817 569.2 8.3e-160 gi|149721152|ref|XP_001490740.1| PREDICTED: simila ( 444) 2813 568.4 1.4e-159 gi|41019534|sp|P46467.2|VPS4B_MOUSE RecName: Full= ( 444) 2774 560.6 3.1e-157 gi|557876|gb|AAA50497.1| SKD1 ( 444) 2772 560.2 4.1e-157 gi|68533827|gb|AAH99128.1| Vacuolar protein sortin ( 444) 2770 559.9 5.4e-157 gi|74212454|dbj|BAE30972.1| unnamed protein produc ( 444) 2762 558.3 1.6e-156 gi|73945439|ref|XP_857328.1| PREDICTED: similar to ( 452) 2758 557.5 2.9e-156 gi|114673420|ref|XP_001146376.1| PREDICTED: vacuol ( 412) 2702 546.3 5.9e-153 gi|126321178|ref|XP_001375971.1| PREDICTED: simila ( 442) 2701 546.1 7.2e-153 gi|53127342|emb|CAG31054.1| hypothetical protein [ ( 438) 2587 523.5 4.7e-146 gi|224045088|ref|XP_002199401.1| PREDICTED: vacuol ( 441) 2583 522.7 8.1e-146 gi|54311352|gb|AAH84907.1| Vacuolar protein sortin ( 443) 2555 517.1 3.8e-144 gi|27503354|gb|AAH42286.1| Vps4b-prov protein [Xen ( 442) 2525 511.2 2.4e-142 gi|148726388|emb|CAN88476.1| novel protein simlar ( 437) 2511 508.4 1.6e-141 gi|156914745|gb|AAI52664.1| Vps4b protein [Danio r ( 437) 2506 507.4 3.2e-141 gi|49522922|gb|AAH75169.1| MGC82073 protein [Xenop ( 443) 2504 507.0 4.3e-141 gi|32766673|gb|AAH55202.1| Vacuolar protein sortin ( 437) 2501 506.4 6.4e-141 gi|209154086|gb|ACI33275.1| Vacuolar protein sorti ( 438) 2455 497.3 3.6e-138 gi|223647704|gb|ACN10610.1| Vacuolar protein sorti ( 527) 2441 494.6 2.9e-137 gi|126304811|ref|XP_001366899.1| PREDICTED: simila ( 437) 2420 490.3 4.5e-136 gi|73957450|ref|XP_536805.2| PREDICTED: similar to ( 437) 2400 486.4 7e-135 gi|62511217|sp|Q8VEJ9.1|VPS4A_MOUSE RecName: Full= ( 437) 2398 486.0 9.3e-135 gi|183986000|gb|AAI66312.1| LOC100158600 protein [ ( 434) 2397 485.8 1.1e-134 gi|109129052|ref|XP_001093648.1| PREDICTED: vacuol ( 516) 2397 485.8 1.2e-134 gi|62511240|sp|Q9UN37.1|VPS4A_HUMAN RecName: Full= ( 437) 2393 485.0 1.8e-134 gi|74199600|dbj|BAE41476.1| unnamed protein produc ( 437) 2389 484.2 3.2e-134 gi|6563218|gb|AAF17203.1|AF112215_1 SKD1 protein [ ( 437) 2388 484.0 3.7e-134 gi|149411902|ref|XP_001510255.1| PREDICTED: simila ( 484) 2386 483.6 5.2e-134 gi|51703541|gb|AAH81138.1| MGC84050 protein [Xenop ( 436) 2384 483.2 6.4e-134 gi|5381417|gb|AAD42971.1|AF155740_1 vacuolar sorti ( 432) 2383 483.0 7.2e-134 gi|114663303|ref|XP_001147558.1| PREDICTED: vacuol ( 511) 2375 481.4 2.5e-133 gi|149699746|ref|XP_001497215.1| PREDICTED: simila ( 482) 2372 480.8 3.6e-133 gi|91079642|ref|XP_968121.1| PREDICTED: similar to ( 438) 2299 466.3 7.7e-129 gi|55243167|gb|EAA06410.2| AGAP000625-PA [Anophele ( 441) 2287 463.9 4e-128 gi|212516933|gb|EEB18887.1| vacuolar sorting prote ( 439) 2278 462.1 1.4e-127 gi|193704544|ref|XP_001949643.1| PREDICTED: simila ( 441) 2278 462.1 1.4e-127 gi|108881598|gb|EAT45823.1| skd/vacuolar sorting [ ( 443) 2278 462.1 1.4e-127 gi|66564933|ref|XP_393250.2| PREDICTED: similar to ( 441) 2273 461.1 2.8e-127 gi|156555267|ref|XP_001601768.1| PREDICTED: simila ( 441) 2262 459.0 1.3e-126 gi|167866998|gb|EDS30381.1| vacuolar protein sorti ( 447) 2256 457.8 2.9e-126 gi|229290594|gb|EEN61272.1| hypothetical protein B ( 440) 2251 456.8 5.7e-126 gi|156214934|gb|EDO35907.1| predicted protein [Nem ( 442) 2251 456.8 5.8e-126 gi|18568119|gb|AAL75948.1|AF132747_1 SKD2 protein ( 437) 2248 456.2 8.6e-126 gi|193908906|gb|EDW07773.1| GI14672 [Drosophila mo ( 442) 2240 454.6 2.6e-125 >>gi|41019529|sp|O75351.2|VPS4B_HUMAN RecName: Full=Vacu (444 aa) initn: 2915 init1: 2915 opt: 2915 Z-score: 3131.4 bits: 588.6 E(): 1.2e-165 Smith-Waterman score: 2915; 100.000% identity (100.000% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA ::::::::::::::::::::::::::::::::::::: gi|410 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG ::::::::::::::::::::::::::::::::::::::::::::::: gi|410 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|75070512|sp|Q5R658.1|VPS4B_PONAB RecName: Full=Vacu (444 aa) initn: 2905 init1: 2905 opt: 2905 Z-score: 3120.6 bits: 586.7 E(): 4.6e-165 Smith-Waterman score: 2905; 99.550% identity (100.000% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA ::::::::::::::::::::::::::::::::::::: gi|750 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|750 VQYFLHVVKYEAQGDKAKQSIRAQCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|750 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMRGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG ::::::::::::::::::::::::::::::::::::::::::::::: gi|750 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|158255300|dbj|BAF83621.1| unnamed protein product [ (444 aa) initn: 2905 init1: 2905 opt: 2905 Z-score: 3120.6 bits: 586.7 E(): 4.6e-165 Smith-Waterman score: 2905; 99.550% identity (100.000% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA ::::::::::::::::::::::::::::::::::::: gi|158 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|158 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEELVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|158 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKADGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG ::::::::::::::::::::::::::::::::::::::::::::::: gi|158 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|3329390|gb|AAC39874.1| SKD1 homolog [Homo sapiens] (444 aa) initn: 2903 init1: 2903 opt: 2903 Z-score: 3118.5 bits: 586.3 E(): 6e-165 Smith-Waterman score: 2903; 99.324% identity (100.000% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA ::::::::::::::::::::::::::::::::::::: gi|332 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP ::::::::::::::::.::::::::::::.:::::::::::::::::::::::::::::: gi|332 KGNDSDGEGESDDPEKRKLQNQLQGAIVIDRPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 GADIGIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG ::::::::::::::::::::::::::::::::::::::::::::::: gi|332 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|158255942|dbj|BAF83942.1| unnamed protein product [ (444 aa) initn: 2897 init1: 2897 opt: 2897 Z-score: 3112.1 bits: 585.1 E(): 1.4e-164 Smith-Waterman score: 2897; 99.324% identity (99.775% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA ::::::::::::::::::::::::::::::::::::: gi|158 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP :::::::::::: :.::::::::::::::::::::::::::::::::::::::::::::: gi|158 KGNDSDGEGESDGPDKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|158 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRETDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG ::::::::::::::::::::::::::::::::::::::::::::::: gi|158 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|122143535|sp|Q0VD48.1|VPS4B_BOVIN RecName: Full=Vac (444 aa) initn: 2825 init1: 2825 opt: 2825 Z-score: 3034.8 bits: 570.8 E(): 2.8e-160 Smith-Waterman score: 2825; 96.622% identity (98.874% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA :.:: ::::::::::::::::::::::::::::::: gi|122 MASTPTNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE ::::::::::::::::::::::::::::::::::::::::..::: :::::::::.:::: gi|122 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKREKKPQKPVKEGQPAPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS ::::::::::::::::::::::::: ::::::::::::::::::::::::.::.::.::: gi|122 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :::::::::::::::::::::::::::::::::::::..::::::::::::::::::::: gi|122 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNNIVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG :::::::::::: :::::::::.:::::::::::::::::::::::: gi|122 DVPGDKLLEPVVCMSDMLRSLSSTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|73945429|ref|XP_848812.1| PREDICTED: similar to vac (444 aa) initn: 2817 init1: 2817 opt: 2817 Z-score: 3026.2 bits: 569.2 E(): 8.3e-160 Smith-Waterman score: 2817; 96.396% identity (98.649% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA :.::: :.:::.::::::::::::::::::::::::: gi|739 MASTSANFQKAVDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE ::::::::::::::::::::::::::::::::::::::::.::: :::::::::::::: gi|739 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKTPQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KGNDSDGEGETDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS ::::::::::::::::::::::::: ::::::::::::::::::.:.::::::.:::::: gi|739 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLAETDFRELGKKTDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :::::::::::::::::::::::::::: ::::::::..::::::::::::::::::::: gi|739 GADISIIVRDALMQPVRKVQSATHFKKVCGPSRADPNKIVDDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG :::::::::::: :::::::::::::::::::::::::::::::::: gi|739 DVPGDKLLEPVVCMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|149721152|ref|XP_001490740.1| PREDICTED: similar to (444 aa) initn: 2813 init1: 2813 opt: 2813 Z-score: 3021.9 bits: 568.4 E(): 1.4e-159 Smith-Waterman score: 2813; 96.622% identity (98.423% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA :.::: ::::::::::::::::::::::::::::::: gi|149 MASTSTNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE ::::::::::::::::::::::::::::::::::::::::.:::: :::::::::::::: gi|149 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEGQPSPADE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|149 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWNDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS ::::::::::::::::::::::::: ::::::::::::::::::::::::::: ::.::: gi|149 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRELGMKTEGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM ::::::::::::::::::::::::::::::::::::. .:.::: ::::::::::::::: gi|149 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPSSIVNDLLMPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG :::::::::::: :::::::::.:::::::::::::::::::::::: gi|149 DVPGDKLLEPVVCMSDMLRSLSSTKPTVNEHDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|41019534|sp|P46467.2|VPS4B_MOUSE RecName: Full=Vacu (444 aa) initn: 2774 init1: 2774 opt: 2774 Z-score: 2980.0 bits: 560.6 E(): 3.1e-157 Smith-Waterman score: 2774; 95.495% identity (98.423% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA :.::. ::::::::::::::::::::::::::::::: gi|410 MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE ::::::::::::::::::::::::::::::::::::::::.:::: :::::: : .:.:: gi|410 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 KGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|410 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS ::::::::::::::::::::::::: :::::::.::::.::::::::::.:::::::::: gi|410 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM ::::::::::::::::::::::::::::::::::::: .:.::::::::::::::::::: gi|410 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG :::::::::::::: :::::::.:::::::.:::::::::::::::: gi|410 DVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQEG 400 410 420 430 440 >>gi|557876|gb|AAA50497.1| SKD1 (444 aa) initn: 2772 init1: 2772 opt: 2772 Z-score: 2977.9 bits: 560.2 E(): 4.1e-157 Smith-Waterman score: 2772; 95.270% identity (98.649% similar) in 444 aa overlap (24-467:1-444) 10 20 30 40 50 60 fk0994 RFDVAAVGSPRPSFPWEPPGNSAMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHA :.::. ::::::::::::::::::::::::::::::: gi|557 MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHA 10 20 30 70 80 90 100 110 120 fk0994 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE ::::::::::::::::::::::::::::::::::::::::.:::: ::::::.: .:.:: gi|557 VQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEAQSGPVDE 40 50 60 70 80 90 130 140 150 160 170 180 fk0994 KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFP 100 110 120 130 140 150 190 200 210 220 230 240 fk0994 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK 160 170 180 190 200 210 250 260 270 280 290 300 fk0994 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 220 230 240 250 260 270 310 320 330 340 350 360 fk0994 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS ::::::::::::::::::::::::: :::::::.::::.::::::::::.:::::::::: gi|557 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 280 290 300 310 320 330 370 380 390 400 410 420 fk0994 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWM :.::::::::::::::::::::::::::::::::::: .:.::::::::::::::::::: gi|557 GVDISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWM 340 350 360 370 380 390 430 440 450 460 fk0994 DVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG :::::::::::::: :::::::.:::::::.:::::::::::::::: gi|557 DVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQEG 400 410 420 430 440 467 residues in 1 query sequences 3020366983 residues in 8842601 library sequences Tcomplib [34.26] (8 proc) start: Mon May 25 15:36:37 2009 done: Mon May 25 15:39:41 2009 Total Scan time: 1123.100 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]