hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15394277/chunk_1/iprscan-20090525-15394277.nocrc
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Query sequence: fk09943
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00004.19.fs ATPase family associated with various cellul   276.7    2.1e-83   1
PF00004.19.ls ATPase family associated with various cellul   278.6    1.1e-80   1
PF09336.1.fs Vps4 C terminal oligomerisation domain         145.6    4.7e-46   1
PF09336.1.ls Vps4 C terminal oligomerisation domain         147.5    3.3e-41   1
PF04212.8.fs MIT (microtubule interacting and transport)     45.4    3.1e-12   1
PF04212.8.ls MIT (microtubule interacting and transport)     47.4    4.4e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04212.8.ls   1/1      68    97 ..     1    29 []    47.4  4.4e-11
PF04212.8.fs   1/1      68    97 ..     1    29 []    45.4  3.1e-12
PF00004.19.fs   1/1     192   377 ..     1   215 []   276.7  2.1e-83
PF00004.19.ls   1/1     192   377 ..     1   215 []   278.6  1.1e-80
PF09336.1.fs   1/1     403   464 ..     1    67 []   145.6  4.7e-46
PF09336.1.ls   1/1     403   464 ..     1    67 []   147.5  3.3e-41

Alignments of top-scoring domains:
PF04212.8.ls: domain 1 of 1, from 68 to 97: score 47.4, E = 4.4e-11
                   *->lkye.kddkrReaikaKiaeYldRAEeLKe<-*
                      +kye + dk+++ i+aK++eYldRAE+LKe   
     fk09943    68    VKYEaQGDKAKQSIRAKCTEYLDRAEKLKE    97   

PF04212.8.fs: domain 1 of 1, from 68 to 97: score 45.4, E = 3.1e-12
                   *->lkye.kddkrReaikaKiaeYldRAEeLKe<-*
                      +kye + dk+++ i+aK++eYldRAE+LKe   
     fk09943    68    VKYEaQGDKAKQSIRAKCTEYLDRAEKLKE    97   

PF00004.19.fs: domain 1 of 1, from 192 to 377: score 276.7, E = 2.1e-83
                   *->gvLLyGPPGtGKTllAkavAnelg.apfisisgselvskyvGesekr
                      g+LL+GPPGtGK+ lAkavA+e+++ +f+sis+s+lvsk+ Gesek+
     fk09943   192    GILLFGPPGTGKSYLAKAVATEANnSTFFSISSSDLVSKWLGESEKL 238  

                   vralfelArkslkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLlte
                   v++lf+lAr++   +Ps iiFIDEiD+l+++R+++e+++++r++ ++l++
     fk09943   239 VKNLFQLAREN---KPS-IIFIDEIDSLCGSRSEnESEAARRIKTEFLVQ 284  

                   mDLErigfedhylrgsdv.fDlsgviviaaTNrpdllDpALlrpGRfdrr
                   m                v++D++g++v++aTN p+ lD+A++r  Rf++r
     fk09943   285 MQ--------------GVgVDNDGILVLGATNIPWVLDSAIRR--RFEKR 318  

                   ievplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrt
                   i++plP+ ++R  ++k hl     +l        ++ d++e    l r+t
     fk09943   319 IYIPLPEPHARAAMFKLHLGTTQNSL--------TEADFRE----LGRKT 356  

                   pgfsgadlaalcreAalralr<-*
                   +g+sgad+  ++r+A ++++r   
     fk09943   357 DGYSGADISIIVRDALMQPVR    377  

PF00004.19.ls: domain 1 of 1, from 192 to 377: score 278.6, E = 1.1e-80
                   *->gvLLyGPPGtGKTllAkavAnelg.apfisisgselvskyvGesekr
                      g+LL+GPPGtGK+ lAkavA+e+++ +f+sis+s+lvsk+ Gesek+
     fk09943   192    GILLFGPPGTGKSYLAKAVATEANnSTFFSISSSDLVSKWLGESEKL 238  

                   vralfelArkslkaaPspiiFIDEiDalapkRgd.egdvssrvvnqLlte
                   v++lf+lAr++   +Ps iiFIDEiD+l+++R+++e+++++r++ ++l++
     fk09943   239 VKNLFQLAREN---KPS-IIFIDEIDSLCGSRSEnESEAARRIKTEFLVQ 284  

                   mDLErigfedhylrgsdv.fDlsgviviaaTNrpdllDpALlrpGRfdrr
                   m                v++D++g++v++aTN p+ lD+A++r  Rf++r
     fk09943   285 MQ--------------GVgVDNDGILVLGATNIPWVLDSAIRR--RFEKR 318  

                   ievplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArrt
                   i++plP+ ++R  ++k hl     +l        ++ d++e    l r+t
     fk09943   319 IYIPLPEPHARAAMFKLHLGTTQNSL--------TEADFRE----LGRKT 356  

                   pgfsgadlaalcreAalralr<-*
                   +g+sgad+  ++r+A ++++r   
     fk09943   357 DGYSGADISIIVRDALMQPVR    377  

PF09336.1.fs: domain 1 of 1, from 403 to 464: score 145.6, E = 4.7e-46
                   *->llTPCSPGDpgAiEmtwmdieakglsdkLlePlpltmkDFiKAlkts
                      llTPCSPGDpgAiEmtwmd++    +dkLleP  ++m+D++++l+++
     fk09943   403    LLTPCSPGDPGAIEMTWMDVP----GDKLLEP-VVSMSDMLRSLSNT 444  

                   rPTVskeDlekheeFTneFG<-*
                   +PTV+++Dl k+++FT++FG   
     fk09943   445 KPTVNEHDLLKLKKFTEDFG    464  

PF09336.1.ls: domain 1 of 1, from 403 to 464: score 147.5, E = 3.3e-41
                   *->llTPCSPGDpgAiEmtwmdieakglsdkLlePlpltmkDFiKAlkts
                      llTPCSPGDpgAiEmtwmd++    +dkLleP  ++m+D++++l+++
     fk09943   403    LLTPCSPGDPGAIEMTWMDVP----GDKLLEP-VVSMSDMLRSLSNT 444  

                   rPTVskeDlekheeFTneFG<-*
                   +PTV+++Dl k+++FT++FG   
     fk09943   445 KPTVNEHDLLKLKKFTEDFG    464  

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