hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15394277/chunk_1/iprscan-20090525-15394277.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk09943
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00745                                                 114.9    9.2e-30   1
SM00382                                                  88.7    6.9e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00745    1/1      27   105 ..     1    81 []   114.9  9.2e-30
SM00382    1/1     189   325 ..     1    92 []    88.7  6.9e-22

Alignments of top-scoring domains:
SM00745: domain 1 of 1, from 27 to 105: score 114.9, E = 9.2e-30
                   *->trdylqkAieliskAlkaDedvagdyeeAlelYkkgieyLlqgikve
                      t+++lqkAi+l+skA ++D+  ag+yeeAl+lY+++++y+l+++k+e
     fk09943    27    TSPNLQKAIDLASKAAQEDK--AGNYEEALQLYQHAVQYFLHVVKYE 71   

                   kpsekrrealkakareYldRAeeikkylderlkp<-*
                   ++++k++++++ak++eYldRAe++k+yl++++k    
     fk09943    72 AQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKK    105  

SM00382: domain 1 of 1, from 189 to 325: score 88.7, E = 6.9e-22
                   *->pgevvllvGppGsGKTTlaralarllgp.gviyidge.........g
                      p + +ll+GppG+GK+ la+a+a +++ + ++ i+ ++  ++  +++
     fk09943   189    PWRGILLFGPPGTGKSYLAKAVATEANNsTFFSISSSdlvskwlgeS 235  

                   gqrirlalalark...dvlllDEitslld.....................
                   ++ ++++++lar+++++++++DEi+sl  ++++++++  ++ + + + + 
     fk09943   236 EKLVKNLFQLAREnkpSIIFIDEIDSLCGsrseneseaarrikteflvqm 285  

                   .........vtviattn..dldpallrrrfdrrivllril<-*
                   ++ + +++++ v+++tn +  ++ ++rrrf++ri++++++   
     fk09943   286 qgvgvdndgILVLGATNipWVLDSAIRRRFEKRIYIPLPE    325  

//