hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12484966/chunk_1/iprscan-20090618-12484966.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk10322
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03949.5.fs Malic enzyme, NAD binding domain               470.5   1.3e-180   1
PF00390.9.fs Malic enzyme, N-terminal domain                433.9   1.7e-139   1
PF03949.5.ls Malic enzyme, NAD binding domain               472.4   5.1e-139   1
PF00390.9.ls Malic enzyme, N-terminal domain                436.0   4.7e-128   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00390.9.fs   1/1     114   303 ..     1   195 []   433.9 1.7e-139
PF00390.9.ls   1/1     114   303 ..     1   195 []   436.0 4.7e-128
PF03949.5.fs   1/1     305   557 ..     1   271 []   470.5 1.3e-180
PF03949.5.ls   1/1     305   557 ..     1   271 []   472.4 5.1e-139

Alignments of top-scoring domains:
PF00390.9.fs: domain 1 of 1, from 114 to 303: score 433.9, E = 1.7e-139
                   *->qgknEtlfykllkdhieedlPivYTPTVGeaCqeyseiyrrprsGlY
                      q++nE+lfy++l+++ie+++PivYTPTVG+aCq+ys+ +r+pr Gl+
     fk10322   114    QDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPR-GLF 159  

                   tsignrgeghIkdiLkNwp.edvrviVVTDGerILGLGDlGPvaGmgImv
                   ++i++r  ghI ++L+ wp++ +++iVVTDGerILGLGDlG ++GmgI+v
     fk10322   160 ITIHDR--GHIASVLNAWPeDVIKAIVVTDGERILGLGDLG-CNGMGIPV 206  

                   GKLaLYtafAGIdPsrvLPivLDvgTNNekLLnDPlYlGlrhkRvrGeeY
                   GKLaLYta++G +P+ +LP+ LDvgT Ne+LL+DPlY+Glr++RvrG eY
     fk10322   207 GKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEY 256  

                   defvDefveavkalfPpfglIqfEDFaapnAFeiLerYreeldipvFND<
                   d+f+Def+eav + ++ ++lIqfEDFa+ nAF++L++Yr+  ++++FND 
     fk10322   257 DDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRN--QYCTFND  303  

                   -*
                     
     fk10322     -    -    

PF00390.9.ls: domain 1 of 1, from 114 to 303: score 436.0, E = 4.7e-128
                   *->qgknEtlfykllkdhieedlPivYTPTVGeaCqeyseiyrrprsGlY
                      q++nE+lfy++l+++ie+++PivYTPTVG+aCq+ys+ +r+pr Gl+
     fk10322   114    QDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPR-GLF 159  

                   tsignrgeghIkdiLkNwp.edvrviVVTDGerILGLGDlGPvaGmgImv
                   ++i++r  ghI ++L+ wp++ +++iVVTDGerILGLGDlG ++GmgI+v
     fk10322   160 ITIHDR--GHIASVLNAWPeDVIKAIVVTDGERILGLGDLG-CNGMGIPV 206  

                   GKLaLYtafAGIdPsrvLPivLDvgTNNekLLnDPlYlGlrhkRvrGeeY
                   GKLaLYta++G +P+ +LP+ LDvgT Ne+LL+DPlY+Glr++RvrG eY
     fk10322   207 GKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEY 256  

                   defvDefveavkalfPpfglIqfEDFaapnAFeiLerYreeldipvFND<
                   d+f+Def+eav + ++ ++lIqfEDFa+ nAF++L++Yr+  ++++FND 
     fk10322   257 DDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRN--QYCTFND  303  

                   -*
                     
     fk10322     -    -    

PF03949.5.fs: domain 1 of 1, from 305 to 557: score 470.5, E = 1.3e-180
                   *->IQGTAaVvLAGLlnAlkitGkklDlsdqkiVffGAGaAGiGiAellv
                      IQGTA+V++AGLl+Al+it+ k  lsdq+i+f GAG+A++GiA l+v
     fk10322   305    IQGTASVAVAGLLAALRITKNK--LSDQTILFQGAGEAALGIAHLIV 349  

                   aamvreGlseeEArknIwlvDrkGlltedRedllnpfkkpfArktnevkg
                   +a+++eGl++e A k+IwlvD+kGl++++R++l + +k++fA++++e+k 
     fk10322   350 MALEKEGLPKEKAIKKIWLVDSKGLIVKGRASL-TQEKEKFAHEHEEMK- 397  

                   wdggtLaEvvkgaKPdvLIGlSgPvpGafteEivraMaehtErPIIFALS
                       +L+ +v  +KP++LIG+++  +Gaf+e i++ Ma+++ErPIIFALS
     fk10322   398 ----NLEAIVQEIKPTALIGVAA-IGGAFSEQILKDMAAFNERPIIFALS 442  

                   NPTpkaEitPedAyewtagrvlfATGSPFpPVel.NGrsdyPNQvNNvLi
                   NPT+kaE+ +e++y+ t gr++fA+GSPF+PV+l+NG + yP+Q+NN+++
     fk10322   443 NPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLpNGQTLYPGQGNNSYV 492  

                   FPGIglGaLdvrArrItdeMflAAAeALAelvteevsdVaAYGelelgeg
                   FPG++lG+++++ r Itd+ fl +Ae +A++v++           +l+eg
     fk10322   493 FPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDK----------HLEEG 532  

                   yiiPppfdiRevsprVAvAVAkaAv<-*
                   +++Pp++ iR+vs ++A++  k A+   
     fk10322   533 RLYPPLNTIRDVSLKIAEKIVKDAY    557  

PF03949.5.ls: domain 1 of 1, from 305 to 557: score 472.4, E = 5.1e-139
                   *->IQGTAaVvLAGLlnAlkitGkklDlsdqkiVffGAGaAGiGiAellv
                      IQGTA+V++AGLl+Al+it+ k  lsdq+i+f GAG+A++GiA l+v
     fk10322   305    IQGTASVAVAGLLAALRITKNK--LSDQTILFQGAGEAALGIAHLIV 349  

                   aamvreGlseeEArknIwlvDrkGlltedRedllnpfkkpfArktnevkg
                   +a+++eGl++e A k+IwlvD+kGl++++R++l + +k++fA++++e+k 
     fk10322   350 MALEKEGLPKEKAIKKIWLVDSKGLIVKGRASL-TQEKEKFAHEHEEMK- 397  

                   wdggtLaEvvkgaKPdvLIGlSgPvpGafteEivraMaehtErPIIFALS
                       +L+ +v  +KP++LIG+++  +Gaf+e i++ Ma+++ErPIIFALS
     fk10322   398 ----NLEAIVQEIKPTALIGVAA-IGGAFSEQILKDMAAFNERPIIFALS 442  

                   NPTpkaEitPedAyewtagrvlfATGSPFpPVel.NGrsdyPNQvNNvLi
                   NPT+kaE+ +e++y+ t gr++fA+GSPF+PV+l+NG + yP+Q+NN+++
     fk10322   443 NPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLpNGQTLYPGQGNNSYV 492  

                   FPGIglGaLdvrArrItdeMflAAAeALAelvteevsdVaAYGelelgeg
                   FPG++lG+++++ r Itd+ fl +Ae +A++v++           +l+eg
     fk10322   493 FPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDK----------HLEEG 532  

                   yiiPppfdiRevsprVAvAVAkaAv<-*
                   +++Pp++ iR+vs ++A++  k A+   
     fk10322   533 RLYPPLNTIRDVSLKIAEKIVKDAY    557  

//