hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09110938/chunk_1/iprscan-20080811-09110938.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk10446
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05089.3.fs Alpha-N-acetylglucosaminidase (NAGLU)          880.4   7.7e-262   1
PF05089.3.ls Alpha-N-acetylglucosaminidase (NAGLU)          510.2   2.2e-150   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05089.3.ls   1/1       2   402 ..     1   757 []   510.2 2.2e-150
PF05089.3.fs   1/1      17   394 ..   314   741 ..   880.4 7.7e-262

Alignments of top-scoring domains:
PF05089.3.ls: domain 1 of 1, from 2 to 402: score 510.2, E = 2.2e-150
                   *->ggkggrIlisGttgVaiasGLHwYLkyacnaHVsWdktrGvQlASvp
                                                  c  H     +r        
     fk10446     2    ---------------------------QCCLH-----SR-------- 8    

                   lPgaLPavdnaeltietPvpwrYYQNVcTsSYSfvWWgWeRWeREIDWMA
                     g  P+                                           
     fk10446     9 --GMFPR------------------------------------------- 13   

                   LnGInLpLAftGQEAIWqkVyldfGLseaElddyFgGPAFlAWaRMGNlh
                          L                                          
     fk10446    14 -------LS----------------------------------------- 15   

                   gWgGPLppaWldkQLlLQkqILsrMRsLGMTPvLPAFaGhVPkAlkrifP
                                                                     
     fk10446     - -------------------------------------------------- -    

                   eanitrlgsWntfngDsryCCtylLaPsDPLFieIgsrFLrelieeyGei
                                                                     
     fk10446     - -------------------------------------------------- -    

                   thIYncDtFNEmtPPtsADGADARDAAYGDGtAntAvtktkvEvDPALkP
                                 P++                                 
     fk10446    16 --------------PVD--------------------------------- 18   

                   eYlaaaaaAiYesmrkvdpeAvWLnlQGWLFvsdskFWkpaqieAlLhaV
                                     +eAvWL lQGWLF+++++FW+paqi+A+L+aV
     fk10446    19 ------------------TEAVWL-LQGWLFQHQPQFWGPAQIRAVLGAV 49   

                   PrGkllVLDLfaevkPnvwkktasFyGqPfIWCMLHNFGGnigmYGaLda
                   PrG+llVLDLfae++P v+++tasF+GqPfIWCMLHNFGGn+g++GaL+a
     fk10446    50 PRGRLLVLDLFAESQP-VYTRTASFQGQPFIWCMLHNFGGNHGLFGALEA 98   

                   vnsGpeaARlspNStklVGtGMcPEGIeqNpVVYeltsElaWredqvPdl
                   vn+GpeaARl+pNSt +VGtGM+PEGI+qN+VVY+l++El+Wr+d+vPdl
     fk10446    99 VNGGPEAARLFPNST-MVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDL 147  

                   aaWltsYArrRYGkknpqleAAWelLyesvYncrggiADHNkDyIVklPD
                   aaW+ts+A+rRYG+++p+++AAW+lL++svYnc+g++             
     fk10446   148 AAWVTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEA------------- 184  

                   WDPSskvqdDlkqkDSsMikrwwkkkagrylffrRpsalpkpflWYntsd
                                          +++++r++++rRps+++++++WYn+sd
     fk10446   185 -----------------------CRGHNRSPLVRRPSLQMNTSIWYNRSD 211  

                   VlqAleLlltalaaLaleygrsptyryDLvDlTRQllqkladqlYeeAvs
                   V++A++Lllt++++La    +sp++ryDL+DlTRQ++q+l++++YeeA+s
     fk10446   212 VFEAWRLLLTSAPSLA----TSPAFRYDLLDLTRQAVQELVSLYYEEARS 257  

                   AYrkkdvasleqasvkllYeLlkdiDklLAsddnFLLGtWLeqcAraaAd
                   AY++k++asl++a+++l+YeLl+++D++LAsd++FLLG+WLeq AraaA+
     fk10446   258 AYLSKELASLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQ-ARAAAV 306  

                   neaeakqYEwNARtQvTlWyDstdgpeGnllDYAnKqWsGLvedYYlPRW
                   +eaea++YE+N+R+Q+TlW     gpeGn+lDYAnKq++GLv++YY+PRW
     fk10446   307 SEAEADFYEQNSRYQLTLW-----GPEGNILDYANKQLAGLVANYYTPRW 351  

                   rlFLeaLkksLkegrpFkeeafrLkewialerawveseevYPvkprGDtl
                   rlFLeaL++s+++g+pF++++f+ k++++le+a+v+s+++YP++ +    
     fk10446   352 RLFLEALVDSVAQGIPFQQHQFD-KNVFQLEQAFVLSKQRYPSQHV---- 396  

                   aiakklfeky<-*
                        l+      
     fk10446   397 ----VLLPQL    402  

PF05089.3.fs: domain 1 of 1, from 17 to 394: score 880.4, E = 7.7e-262
                   *->vdpeAvWLnlQGWLFvsdskFWkpaqieAlLhaVPrGkllVLDLfae
                      vd+eAvWL lQGWLF+++++FW+paqi+A+L+aVPrG+llVLDLfae
     fk10446    17    VDTEAVWL-LQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLVLDLFAE 62   

                   vkPnvwkktasFyGqPfIWCMLHNFGGnigmYGaLdavnsGpeaARlspN
                   ++P v+++tasF+GqPfIWCMLHNFGGn+g++GaL+avn+GpeaARl+pN
     fk10446    63 SQP-VYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPN 111  

                   StklVGtGMcPEGIeqNpVVYeltsElaWredqvPdlaaWltsYArrRYG
                   St +VGtGM+PEGI+qN+VVY+l++El+Wr+d+vPdlaaW+ts+A+rRYG
     fk10446   112 ST-MVGTGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYG 160  

                   kknpqleAAWelLyesvYncrggiADHNkDyIVklPDWDPSskvqdDlkq
                   +++p+++AAW+lL++svYnc+g++                          
     fk10446   161 VSHPDAGAAWRLLLRSVYNCSGEA-------------------------- 184  

                   kDSsMikrwwkkkagrylffrRpsalpkpflWYntsdVlqAleLlltala
                             +++++r++++rRps+++++++WYn+sdV++A++Lllt+++
     fk10446   185 ----------CRGHNRSPLVRRPSLQMNTSIWYNRSDVFEAWRLLLTSAP 224  

                   aLaleygrsptyryDLvDlTRQllqkladqlYeeAvsAYrkkdvasleqa
                   +La    +sp++ryDL+DlTRQ++q+l++++YeeA+sAY++k++asl++a
     fk10446   225 SLA----TSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELASLLRA 270  

                   svkllYeLlkdiDklLAsddnFLLGtWLeqcAraaAdneaeakqYEwNAR
                   +++l+YeLl+++D++LAsd++FLLG+WLeq AraaA++eaea++YE+N+R
     fk10446   271 GGVLAYELLPALDEVLASDSRFLLGSWLEQ-ARAAAVSEAEADFYEQNSR 319  

                   tQvTlWyDstdgpeGnllDYAnKqWsGLvedYYlPRWrlFLeaLkksLke
                   +Q+TlW     gpeGn+lDYAnKq++GLv++YY+PRWrlFLeaL++s+++
     fk10446   320 YQLTLW-----GPEGNILDYANKQLAGLVANYYTPRWRLFLEALVDSVAQ 364  

                   grpFkeeafrLkewialerawveseevYPvk<-*
                   g+pF++++f+ k++++le+a+v+s+++YP++   
     fk10446   365 GIPFQQHQFD-KNVFQLEQAFVLSKQRYPSQ    394  

//