# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk10490.fasta.nr -Q fk10490.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk10490, 319 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6835332 sequences Expectation_n fit: rho(ln(x))= 5.6336+/-0.000193; mu= 8.3755+/- 0.011 mean_var=90.2953+/-17.619, 0's: 47 Z-trim: 66 B-trim: 428 in 1/65 Lambda= 0.134971 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|168279029|dbj|BAG11394.1| POU domain, class 3, ( 265) 1812 362.3 5.1e-98 gi|194216281|ref|XP_001501398.2| PREDICTED: simila ( 270) 1711 342.6 4.3e-92 gi|86438578|gb|AAI12697.1| POU class 3 homeobox 2 ( 438) 1435 289.0 9.3e-76 gi|35085|emb|CAA77990.1| N-Oct 3 octamer DNA (ATGC ( 443) 1431 288.3 1.6e-75 gi|972767|gb|AAB59611.1| POU-domain transcription ( 443) 1431 288.3 1.6e-75 gi|148673593|gb|EDL05540.1| POU domain, class 3, t ( 312) 1429 287.8 1.6e-75 gi|149045532|gb|EDL98532.1| POU domain, class 3, t ( 445) 1431 288.3 1.6e-75 gi|400662|sp|P31360|PO3F2_MOUSE POU domain, class ( 445) 1431 288.3 1.6e-75 gi|194035107|ref|XP_001926276.1| PREDICTED: POU cl ( 442) 1430 288.1 1.8e-75 gi|37589103|gb|AAH51699.2| POU class 3 homeobox 2 ( 443) 1430 288.1 1.8e-75 gi|149252195|ref|XP_001475480.1| PREDICTED: simila ( 438) 1429 287.9 2.1e-75 gi|78100757|sp|P20265|PO3F2_HUMAN POU domain, clas ( 443) 1429 287.9 2.1e-75 gi|109072165|ref|XP_001083202.1| PREDICTED: simila ( 404) 1427 287.5 2.6e-75 gi|3024235|sp|P56222|PO3F2_RAT POU domain, class 3 ( 445) 1427 287.5 2.8e-75 gi|73973931|ref|XP_539052.2| PREDICTED: similar to ( 638) 1429 288.0 2.8e-75 gi|739455|prf||2003279A brn-2 protein ( 445) 1420 286.1 7.1e-75 gi|193787887|dbj|BAG53090.1| unnamed protein produ ( 376) 1390 280.2 3.6e-73 gi|6002569|gb|AAF00040.1| POU-box protein brain-2 ( 431) 1288 260.4 3.8e-67 gi|3176108|dbj|BAA28666.1| Brain-2 gene [Anolis ca ( 447) 1277 258.3 1.7e-66 gi|2495308|sp|P70030.1|P3F2B_XENLA POU domain, cla ( 385) 1247 252.4 8.8e-65 gi|27370988|gb|AAH41298.1| Pou3f2 protein [Xenopus ( 406) 1242 251.4 1.8e-64 gi|400837|sp|P31365.1|P3F2A_XENLA POU domain, clas ( 382) 1232 249.5 6.6e-64 gi|2495311|sp|P79746|POU47_BRARE POU domain protei ( 378) 1231 249.3 7.5e-64 gi|16611603|gb|AAL27274.1|AF276075_1 POU domain tr ( 403) 1176 238.6 1.3e-60 gi|149046264|gb|EDL99157.1| rCG22262 [Rattus norve ( 290) 1171 237.5 2e-60 gi|399131|sp|P31361|PO3F3_MOUSE POU domain, class ( 495) 1171 237.7 3e-60 gi|162319502|gb|AAI56038.1| POU domain, class 3, t ( 497) 1171 237.7 3.1e-60 gi|5915802|sp|Q63262|PO3F3_RAT POU domain, class 3 ( 497) 1171 237.7 3.1e-60 gi|60547301|gb|AAX23624.1| Brn-1 [Coturnix japonic ( 260) 1163 235.9 5.5e-60 gi|114579297|ref|XP_525843.2| PREDICTED: similar t ( 292) 1163 235.9 6e-60 gi|3176106|dbj|BAA28665.1| Brain-1 gene [Anolis ca ( 454) 1165 236.5 6.4e-60 gi|47224217|emb|CAG09063.1| unnamed protein produc ( 400) 1163 236.1 7.6e-60 gi|119622176|gb|EAX01771.1| POU domain, class 3, t ( 500) 1163 236.1 9e-60 gi|2506534|sp|P20264|PO3F3_HUMAN POU domain, class ( 500) 1163 236.1 9e-60 gi|194671340|ref|XP_001787898.1| PREDICTED: simila ( 828) 1165 236.7 1e-59 gi|126337301|ref|XP_001371773.1| PREDICTED: simila ( 516) 1160 235.6 1.4e-59 gi|1730452|emb|CAA69214.1| POU domain protein [Dan ( 425) 1149 233.3 5.3e-59 gi|190337565|gb|AAI63489.1| Unknown (protein for M ( 426) 1149 233.3 5.3e-59 gi|400833|sp|P31366|POU1_BRARE POU domain protein ( 425) 1135 230.6 3.5e-58 gi|2495310|sp|P79745|POU23_BRARE POU domain protei ( 443) 1133 230.2 4.7e-58 gi|34193952|gb|AAH56549.1| POU domain gene 23 [Dan ( 444) 1133 230.2 4.7e-58 gi|1730449|emb|CAA69212.1| POU domain protein [Dan ( 428) 1123 228.3 1.8e-57 gi|3025321|sp|P56224|POU12_BRARE POU domain protei ( 437) 1123 228.3 1.8e-57 gi|45768559|gb|AAH67685.1| Brn1.2 protein [Danio r ( 334) 1121 227.8 1.9e-57 gi|125858057|gb|AAI29153.1| Brain POU domain gene ( 337) 1121 227.8 1.9e-57 gi|169154909|emb|CAQ14274.1| POU domain gene 12 [D ( 429) 1118 227.3 3.5e-57 gi|47682959|gb|AAH70001.1| Pou12 protein [Danio re ( 437) 1118 227.3 3.5e-57 gi|37194901|gb|AAH58318.1| Pou12 protein [Danio re ( 438) 1118 227.3 3.5e-57 gi|47226909|emb|CAG05801.1| unnamed protein produc ( 420) 1116 226.9 4.5e-57 gi|400835|sp|P31363.1|POU1_XENLA Transcription fac ( 356) 1115 226.7 4.5e-57 >>gi|168279029|dbj|BAG11394.1| POU domain, class 3, tran (265 aa) initn: 1812 init1: 1812 opt: 1812 Z-score: 1915.0 bits: 362.3 E(): 5.1e-98 Smith-Waterman score: 1812; 100.000% identity (100.000% similar) in 265 aa overlap (55-319:1-265) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|168 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 120 130 140 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITAPPPQGPPGHPGAHHDPHSDEDTPTSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITAPPPQGPPGHPGAHHDPHSDEDTPTSD 40 50 60 70 80 90 150 160 170 180 190 200 fk1049 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 100 110 120 130 140 150 210 220 230 240 250 260 fk1049 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA 160 170 180 190 200 210 270 280 290 300 310 fk1049 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 220 230 240 250 260 >>gi|194216281|ref|XP_001501398.2| PREDICTED: similar to (270 aa) initn: 1299 init1: 1299 opt: 1711 Z-score: 1808.6 bits: 342.6 E(): 4.3e-92 Smith-Waterman score: 1711; 95.556% identity (95.556% similar) in 270 aa overlap (55-319:1-270) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|194 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 120 130 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITAPPPQGPPGH-----PGAHHDPHSDED :::::::::::::::::::::::::::::::::: : : :::::::::::: gi|194 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGGSGGEXXPGAHHDPHSDED 40 50 60 70 80 90 140 150 160 170 180 190 fk1049 TPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCK 100 110 120 130 140 150 200 210 220 230 240 250 fk1049 LKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQE 160 170 180 190 200 210 260 270 280 290 300 310 fk1049 ITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 220 230 240 250 260 270 >>gi|86438578|gb|AAI12697.1| POU class 3 homeobox 2 [Bos (438 aa) initn: 1382 init1: 1382 opt: 1435 Z-score: 1515.3 bits: 289.0 E(): 9.3e-76 Smith-Waterman score: 1451; 60.274% identity (60.502% similar) in 438 aa overlap (55-319:1-438) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG ::::::::::::::::::::.::::::::: gi|864 MATAASNHYSLLTSSASIVHTEPPGGMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::::::::::::::::::::: gi|864 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDG 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|864 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGTLQQQQQQQQQQQQQQQQQQQQRPPHLV 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|864 HHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGL 160 170 180 190 200 210 120 130 140 150 fk1049 ---------------------------PPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAK ::::::::::::::::::::::::::::::::: gi|864 RDAHDEPHHADHHPHPHSHAHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAK 220 230 240 250 260 270 160 170 180 190 200 210 fk1049 QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|864 QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEA 280 290 300 310 320 330 220 230 240 250 260 270 fk1049 DSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|864 DSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEK 340 350 360 370 380 390 280 290 300 310 fk1049 EVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ :::::::::::::::::::::::::::::::::::::::::::::::: gi|864 EVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 >>gi|35085|emb|CAA77990.1| N-Oct 3 octamer DNA (ATGCAAAT (443 aa) initn: 1382 init1: 1382 opt: 1431 Z-score: 1511.0 bits: 288.3 E(): 1.6e-75 Smith-Waterman score: 1438; 59.594% identity (59.819% similar) in 443 aa overlap (55-319:1-443) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::.:::: gi|350 MATAASNHYSLLTSSASIVHAEPPGAMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::::::::::::::::::::: gi|350 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDG 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|350 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|350 PPHLVHHAANHHPGPGAWRTAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGL 160 170 180 190 200 210 120 130 140 fk1049 --------------------------------PPPQGPPGHPGAHHDPHSDEDTPTSDDL :::::::::::::::::::::::::::: gi|350 HHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDL 220 230 240 250 260 270 150 160 170 180 190 200 fk1049 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|350 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK 280 290 300 310 320 330 210 220 230 240 250 260 fk1049 WLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|350 WLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADS 340 350 360 370 380 390 270 280 290 300 310 fk1049 LQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|350 LQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 440 >>gi|972767|gb|AAB59611.1| POU-domain transcription fact (443 aa) initn: 1382 init1: 1382 opt: 1431 Z-score: 1511.0 bits: 288.3 E(): 1.6e-75 Smith-Waterman score: 1446; 59.819% identity (59.819% similar) in 443 aa overlap (55-319:1-443) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|972 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::::::::::::::::::::: gi|972 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDG 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|972 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|972 PPHLVHHAANHHPGPGAWRTAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGL 160 170 180 190 200 210 120 130 140 fk1049 --------------------------------PPPQGPPGHPGAHHDPHSDEDTPTSDDL :::::::::::::::::::::::::::: gi|972 HHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDL 220 230 240 250 260 270 150 160 170 180 190 200 fk1049 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|972 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK 280 290 300 310 320 330 210 220 230 240 250 260 fk1049 WLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|972 WLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADS 340 350 360 370 380 390 270 280 290 300 310 fk1049 LQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|972 LQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 440 >>gi|148673593|gb|EDL05540.1| POU domain, class 3, trans (312 aa) initn: 1382 init1: 1382 opt: 1429 Z-score: 1511.0 bits: 287.8 E(): 1.6e-75 Smith-Waterman score: 1432; 78.723% identity (86.525% similar) in 282 aa overlap (50-319:32-312) 20 30 40 50 60 70 fk1049 RGDRKSERGEGARGEKVTVKCAAPLTGALSPAP---RVMATAASNHYSLLTSSASIVHAE :.: : :.:: :. .:........ gi|148 QQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQ 10 20 30 40 50 60 80 90 100 110 120 fk1049 PP---GGMQQGAGG-----YREAQSLVQGDYGALQSNGHPLSHAHQWITAPPP-QGPPGH : .:: :::: .... .. . . . :: :: :: ::: :::::: gi|148 PSFTVNGML-GAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGH 70 80 90 100 110 120 130 140 150 160 170 180 fk1049 PGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRF 130 140 150 160 170 180 190 200 210 220 230 240 fk1049 EALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALES 190 200 210 220 230 240 250 260 270 280 290 300 fk1049 HFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRD 250 260 270 280 290 300 310 fk1049 TPPHHGVQTPVQ :::::::::::: gi|148 TPPHHGVQTPVQ 310 >>gi|149045532|gb|EDL98532.1| POU domain, class 3, trans (445 aa) initn: 1382 init1: 1382 opt: 1431 Z-score: 1511.0 bits: 288.3 E(): 1.6e-75 Smith-Waterman score: 1442; 59.551% identity (59.551% similar) in 445 aa overlap (55-319:1-445) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|149 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::::::::::::::::::::: gi|149 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGSGGGGGGGGGGGGGGGGGGDG 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|149 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQQ 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|149 QRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPA 160 170 180 190 200 210 120 130 140 fk1049 ----------------------------------PPPQGPPGHPGAHHDPHSDEDTPTSD :::::::::::::::::::::::::: gi|149 GLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSD 220 230 240 250 260 270 150 160 170 180 190 200 fk1049 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 280 290 300 310 320 330 210 220 230 240 250 260 fk1049 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA 340 350 360 370 380 390 270 280 290 300 310 fk1049 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 440 >>gi|400662|sp|P31360|PO3F2_MOUSE POU domain, class 3, t (445 aa) initn: 1382 init1: 1382 opt: 1431 Z-score: 1511.0 bits: 288.3 E(): 1.6e-75 Smith-Waterman score: 1442; 59.551% identity (59.551% similar) in 445 aa overlap (55-319:1-445) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|400 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::::::::::::::::::::: gi|400 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDG 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|400 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQQ 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|400 QRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPA 160 170 180 190 200 210 120 130 140 fk1049 ----------------------------------PPPQGPPGHPGAHHDPHSDEDTPTSD :::::::::::::::::::::::::: gi|400 GLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSD 220 230 240 250 260 270 150 160 170 180 190 200 fk1049 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 280 290 300 310 320 330 210 220 230 240 250 260 fk1049 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA 340 350 360 370 380 390 270 280 290 300 310 fk1049 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|400 DSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 440 >>gi|194035107|ref|XP_001926276.1| PREDICTED: POU class (442 aa) initn: 1382 init1: 1382 opt: 1430 Z-score: 1510.0 bits: 288.1 E(): 1.8e-75 Smith-Waterman score: 1440; 59.729% identity (59.955% similar) in 442 aa overlap (55-319:1-442) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|194 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::.:::::::::::::::::: gi|194 AGGYREAQSLVQGDYAALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDS 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|194 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQRP 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|194 PHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLH 160 170 180 190 200 210 120 130 140 fk1049 -------------------------------PPPQGPPGHPGAHHDPHSDEDTPTSDDLE ::::::::::::::::::::::::::::: gi|194 HHGLRDAHDEPHHTDHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLE 220 230 240 250 260 270 150 160 170 180 190 200 fk1049 QFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKW 280 290 300 310 320 330 210 220 230 240 250 260 fk1049 LEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSL 340 350 360 370 380 390 270 280 290 300 310 fk1049 QLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 440 >>gi|37589103|gb|AAH51699.2| POU class 3 homeobox 2 [Hom (443 aa) initn: 1382 init1: 1382 opt: 1430 Z-score: 1509.9 bits: 288.1 E(): 1.8e-75 Smith-Waterman score: 1446; 59.819% identity (59.819% similar) in 443 aa overlap (55-319:1-443) 30 40 50 60 70 80 fk1049 SERGEGARGEKVTVKCAAPLTGALSPAPRVMATAASNHYSLLTSSASIVHAEPPGGMQQG :::::::::::::::::::::::::::::: gi|375 MATAASNHYSLLTSSASIVHAEPPGGMQQG 10 20 30 90 100 110 fk1049 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA-------------------------- :::::::::::::::::::::::::::::::::: gi|375 AGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGGGGGGGGGGGGGGGGGGDG 40 50 60 70 80 90 fk1049 ------------------------------------------------------------ gi|375 SPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQR 100 110 120 130 140 150 fk1049 ------------------------------------------------------------ gi|375 PPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQSAGL 160 170 180 190 200 210 120 130 140 fk1049 --------------------------------PPPQGPPGHPGAHHDPHSDEDTPTSDDL :::::::::::::::::::::::::::: gi|375 HHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDL 220 230 240 250 260 270 150 160 170 180 190 200 fk1049 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|375 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNK 280 290 300 310 320 330 210 220 230 240 250 260 fk1049 WLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|375 WLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADS 340 350 360 370 380 390 270 280 290 300 310 fk1049 LQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|375 LQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGAEDVYGGSRDTPPHHGVQTPVQ 400 410 420 430 440 319 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 09:14:36 2008 done: Mon Aug 11 09:17:12 2008 Total Scan time: 759.770 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]