hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09171399/chunk_1/iprscan-20080811-09171399.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk10490
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00157.8.ls Pou domain - N-terminal to homeobox domain     194.6    2.1e-55   1
PF00157.8.fs Pou domain - N-terminal to homeobox domain     192.7    8.1e-55   1
PF00046.19.ls Homeobox domain                                 91.6    2.2e-24   1
PF00046.19.fs Homeobox domain                                 89.6    8.6e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00157.8.fs   1/1     138   212 ..     1    78 []   192.7  8.1e-55
PF00157.8.ls   1/1     138   212 ..     1    78 []   194.6  2.1e-55
PF00046.19.fs   1/1     231   287 ..     1    57 []    89.6  8.6e-24
PF00046.19.ls   1/1     231   287 ..     1    57 []    91.6  2.2e-24

Alignments of top-scoring domains:
PF00157.8.fs: domain 1 of 1, from 138 to 212: score 192.7, E = 8.1e-55
                   *->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ
                      +++++ ++LE+FAk+FKqRRIkLG+TQadVGlALg+lyg   n+fSQ
     fk10490   138    EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG---NVFSQ 181  

                   tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-*
                   tTICRFEaLqLSfKNmcKLKPlL+kWLeeA+   
     fk10490   182 TTICRFEALQLSFKNMCKLKPLLNKWLEEAD    212  

PF00157.8.ls: domain 1 of 1, from 138 to 212: score 194.6, E = 2.1e-55
                   *->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ
                      +++++ ++LE+FAk+FKqRRIkLG+TQadVGlALg+lyg   n+fSQ
     fk10490   138    EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG---NVFSQ 181  

                   tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-*
                   tTICRFEaLqLSfKNmcKLKPlL+kWLeeA+   
     fk10490   182 TTICRFEALQLSFKNMCKLKPLLNKWLEEAD    212  

PF00046.19.fs: domain 1 of 1, from 231 to 287: score 89.6, E = 8.6e-24
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r+kRT++  +   +LE +F k+++Ps++e+  LA++L+L++++V+vW
     fk10490   231    RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVW 277  

                   FQNRRaKwKk<-*
                   F+NRR+K+K+   
     fk10490   278 FCNRRQKEKR    287  

PF00046.19.ls: domain 1 of 1, from 231 to 287: score 91.6, E = 2.2e-24
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r+kRT++  +   +LE +F k+++Ps++e+  LA++L+L++++V+vW
     fk10490   231    RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVW 277  

                   FQNRRaKwKk<-*
                   F+NRR+K+K+   
     fk10490   278 FCNRRQKEKR    287  

//