hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-09171399/chunk_1/iprscan-20080811-09171399.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk10490 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00352 194.4 1.1e-53 1 SM00389 82.3 5.9e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00352 1/1 138 212 .. 1 78 [] 194.4 1.1e-53 SM00389 1/1 230 292 .. 1 63 [] 82.3 5.9e-20 Alignments of top-scoring domains: SM00352: domain 1 of 1, from 138 to 212: score 194.4, E = 1.1e-53 *->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ +++++ ++LE+FAk+FKqRRIkLG+TQadVGlALg+lyg n+fSQ fk10490 138 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG---NVFSQ 181 tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-* tTICRFEaLqLSfKNmcKLKPlL+kWLeeA+ fk10490 182 TTICRFEALQLSFKNMCKLKPLLNKWLEEAD 212 SM00389: domain 1 of 1, from 230 to 292: score 82.3, E = 5.9e-20 *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv kr+kRts+ + +LE +F k+p+Ps++e+ LA++L+L +++V+v fk10490 230 KRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRV 276 WFQNRRakwkrqekkk<-* WF+NRR+k+kr+ + fk10490 277 WFCNRRQKEKRMTPPG 292 //