hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-09352252/chunk_1/iprscan-20080811-09352252.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk10614 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00689.11.fs Cation transporting ATPase, C-terminu 101.8 1.1e-28 1 PF00689.11.ls Cation transporting ATPase, C-terminu 103.6 5.3e-28 1 PF00122.10.fs E1-E2 ATPase 64.4 2.3e-19 1 PF00702.16.fs haloacid dehalogenase-like hydrolase 64.9 3.1e-18 1 PF00702.16.ls haloacid dehalogenase-like hydrolase 66.8 6.3e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00122.10.fs 1/1 21 129 .. 148 245 .] 64.4 2.3e-19 PF00702.16.fs 1/1 133 482 .. 1 183 [] 64.9 3.1e-18 PF00702.16.ls 1/1 133 482 .. 1 183 [] 66.8 6.3e-17 PF00689.11.ls 1/1 578 729 .. 1 197 [] 103.6 5.3e-28 PF00689.11.fs 1/1 578 729 .. 1 197 [] 101.8 1.1e-28 Alignments of top-scoring domains: PF00122.10.fs: domain 1 of 1, from 21 to 129: score 64.4, E = 2.3e-19 *->ssktPlQrlldkfgkiltpvililavlvfiiwllrnfn.aafggswl ++k+ lQ +l+k++ ++ ++ l++++++ ii +l f + f + fk10614 21 KEKSVLQGKLTKLAVQIGKAGLLMSAITVIILVL-YFViDTFWVQKR 66 eg............llyalifavallVaAcPegLplvvtvalalGtgrmA + + ++ + ++ +i++v++lV+A+PegLpl+vt +la ++++m fk10614 67 -PwlaectpiyiqyFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMM 115 kkgaLVKglpAvEt<-* k + LV++l+A Et fk10614 116 KDNNLVRHLDACET 129 PF00702.16.fs: domain 1 of 1, from 133 to 482: score 64.9, E = 3.1e-18 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgl.....lpleevekl a++ Dk+GTLt + +++a++ + +++++ +p ++ +l fk10614 133 ATAICSDKTGTLTMN-RMTVVQAYINEKHYKKVpepeaIPPNILSYL 178 lgrgl.gerilleggltaell............................. + + + + + ++++ ++ +++ +++ +++++ + + +++ + fk10614 179 VTGISvN--CAYTSKILPPEKegglprhvgnktecallgllldlkrdyqd 226 .................................................. +++ +++ + + ++ +++ ++ ++++++ + +++ ++ ++ fk10614 227 vrneipeealykvytfnsvrksmstvlknsdgsyrifskgaseiilkkcf 276 .................................................. + + +++ + +++++++ ++ ++ +++ ++ ++ + +++++ fk10614 277 kilsangeakvfrprdrddivktviepmaseglrticlafrdfpagepep 326 ...........d.evlglialdklypgarealkaLkrrGikvailTggdr + +++++ ++ +++ ++++d+++p++++a+k+++r+Gi v ++Tg++ fk10614 327 ewdnendivtgLtCIAVVGIEDPVRPEVPDAIKKCQRAGITVRMVTGDNI 376 .naeallealgla.lfdviidsdevggvgpivvgKPkpeifllalerlgv ++a+a +a+ ++++ +++ + +++ f + ++ ++ fk10614 377 nTARA------IAtKCGILHPGEDFL--------CLEGKDFNRRIRNEKG 412 kpeevg....................................pe.vlmVG + e ++ ++ ++ + +++++++++ ++ +++ +++ + v++ G fk10614 413 EIE--QeridkiwpklrvlarssptdkhtlvkgiidstvsdqRQvVAVTG 460 DgvnDapalaaAGvgvamgngg<-* Dg nD pal++A+vg amg +g fk10614 461 DGTNDGPALKKADVGFAMGIAG 482 PF00702.16.ls: domain 1 of 1, from 133 to 482: score 66.8, E = 6.3e-17 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgl.....lpleevekl a++ Dk+GTLt + +++a++ + +++++ +p ++ +l fk10614 133 ATAICSDKTGTLTMN-RMTVVQAYINEKHYKKVpepeaIPPNILSYL 178 lgrgl.gerilleggltaell............................. + + + + + ++++ ++ +++ +++ +++++ + + +++ + fk10614 179 VTGISvN--CAYTSKILPPEKegglprhvgnktecallgllldlkrdyqd 226 .................................................. +++ +++ + + ++ +++ ++ ++++++ + +++ ++ ++ fk10614 227 vrneipeealykvytfnsvrksmstvlknsdgsyrifskgaseiilkkcf 276 .................................................. + + +++ + +++++++ ++ ++ +++ ++ ++ + +++++ fk10614 277 kilsangeakvfrprdrddivktviepmaseglrticlafrdfpagepep 326 ...........d.evlglialdklypgarealkaLkrrGikvailTggdr + +++++ ++ +++ ++++d+++p++++a+k+++r+Gi v ++Tg++ fk10614 327 ewdnendivtgLtCIAVVGIEDPVRPEVPDAIKKCQRAGITVRMVTGDNI 376 .naeallealgla.lfdviidsdevggvgpivvgKPkpeifllalerlgv ++a+a +a+ ++++ +++ + +++ f + ++ ++ fk10614 377 nTARA------IAtKCGILHPGEDFL--------CLEGKDFNRRIRNEKG 412 kpeevg....................................pe.vlmVG + e ++ ++ ++ + +++++++++ ++ +++ +++ + v++ G fk10614 413 EIE--QeridkiwpklrvlarssptdkhtlvkgiidstvsdqRQvVAVTG 460 DgvnDapalaaAGvgvamgngg<-* Dg nD pal++A+vg amg +g fk10614 461 DGTNDGPALKKADVGFAMGIAG 482 PF00689.11.ls: domain 1 of 1, from 578 to 729: score 103.6, E = 5.3e-28 *->RpPRnpkDeliitgllffrylviGvivavatlaaFvwwfygggenGi R+P+ + +++l++++ +++++++a ++l++ ++ +++g fk10614 578 RKPYGR-----NKPLISRTTMKNILGHAFYQLVVVFTLLFAG----- 614 dfgPgllygqlthwescsandledsfkgqewCeifrkglefratTmaFtv ++++ + g +++ +++ ++ ++T++F++ fk10614 615 EKFFDIDSGRNAPLHAP----------------------PSEHYTIVFNT 642 lVviqmfNAWEalncrsefFmhPldrnSlfqmgp.lwrNkwLllAvvlsl +V++q+fN ++n+r ++ + +++ ++++N +++ +v +++ fk10614 643 FVLMQLFN---EINARK------IHGE--RNVFEgIFNNAIFCTIVLGTF 681 alqllivYvPglqtiFqthpllslqeWlvvlpfsflvfildEirKfikRr ++q++iv ++g +++++ l s+++Wl+ + +++ ++++ ++ i+ + fk10614 682 VVQIIIVQFGGKPFSCS--EL-SIEQWLWSIFLGMGTLLWGQLISTIPTS 728 r<-* r fk10614 729 R 729 PF00689.11.fs: domain 1 of 1, from 578 to 729: score 101.8, E = 1.1e-28 *->RpPRnpkDeliitgllffrylviGvivavatlaaFvwwfygggenGi R+P+ + +++l++++ +++++++a ++l++ ++ +++g fk10614 578 RKPYGR-----NKPLISRTTMKNILGHAFYQLVVVFTLLFAG----- 614 dfgPgllygqlthwescsandledsfkgqewCeifrkglefratTmaFtv ++++ + g +++ +++ ++ ++T++F++ fk10614 615 EKFFDIDSGRNAPLHAP----------------------PSEHYTIVFNT 642 lVviqmfNAWEalncrsefFmhPldrnSlfqmgp.lwrNkwLllAvvlsl +V++q+fN ++n+r ++ + +++ ++++N +++ +v +++ fk10614 643 FVLMQLFN---EINARK------IHGE--RNVFEgIFNNAIFCTIVLGTF 681 alqllivYvPglqtiFqthpllslqeWlvvlpfsflvfildEirKfikRr ++q++iv ++g +++++ l s+++Wl+ + +++ ++++ ++ i+ + fk10614 682 VVQIIIVQFGGKPFSCS--EL-SIEQWLWSIFLGMGTLLWGQLISTIPTS 728 r<-* r fk10614 729 R 729 //