hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-09352252/chunk_1/iprscan-20080811-09352252.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk10614 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01517 ATPase-IIB_Ca: calcium-translocating P- 1183.2 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpor 313.6 1.1e-91 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01517 1/1 1 728 [. 1 885 [] 1183.2 0 TIGR01494 1/6 73 159 .. 154 237 .. 99.4 3.5e-27 TIGR01494 4/6 339 389 .. 316 366 .. 70.2 1.2e-18 TIGR01494 5/6 426 541 .. 363 467 .. 122.1 5.1e-34 Alignments of top-scoring domains: TIGR01517: domain 1 of 1, from 1 to 728: score 1183.2, E = 0 *->eesvreetsiedavidefdvsvsielkLtdilkvyeklGgaeGiatK fk10614 - ----------------------------------------------- - LktdlneGvrsstlerRekvYGkNeLPekppkSFLqlVweAlsDktLiLL R+k+ fk10614 1 ----------------RVKK------------------------------ 4 svAAvVSlVvgeekeeketGWIEGvAILvSVilVVlVtAvNDYkkelqFR V +V fk10614 5 ---------------------------------VEMV------------- 8 eLnsrkkeeqkikVIRgGqeiqIsihdvvVGDivsLstGDvVPADGvfIs + +k + + i fk10614 9 --M-KKIKRKQI-------------------------------------- 17 GlklkiDESSiTGESdpikKgkvkLLSGTkVleGsGrMLvTAVGvnSftG +K fk10614 18 -----------------CQKK----------------------------- 21 klmteLreageeePLQlkLseLAslIgkfGlgsAvLlflvLvlryvieii e ++LQ+kL++LA++Igk+Gl+++++++++Lvl++vi+++ fk10614 22 ----------EKSVLQGKLTKLAVQIGKAGLLMSAITVIILVLYFVIDTF 61 ved........teedaqtfldlFiiaVTivVVAVPEGLPLAVTlALAYsm ++++++ + t++++q+f+++Fii+VT++VVAVPEGLPLAVT++LAYs+ fk10614 62 WVQkrpwlaecTPIYIQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSV 111 kkMmkDnNLVRhLaACETMGsATaICSDKTGTLTqNvMsVVqgyIgeea. kkMmkDnNLVRhL+ACETMG+ATaICSDKTGTLT+N+M+VVq+yI+e++ fk10614 112 KKMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYINEKHy 161 .................vrniLvegivlNssseevkdggkeefiGsKTEc ++ ++++ +++ + v++i+v++++++++++++k+gg+++++G+KTEc fk10614 162 kkvpepeaippnilsylVTGISVNCAYTSKILPPEKEGGLPRHVGNKTEC 211 ALLdfgllllrdvqevrk...eekvGvkiyPFnSeRKkMSvvvkhsgG.y ALL+++l+l+rd+q vr++ +ee++ +k+y+FnS+RK+MS+v+k+s+G+y fk10614 212 ALLGLLLDLKRDYQDVRNeipEEAL-YKVYTFNSVRKSMSTVLKNSDGsY 260 RlFiKGAsEIvlkkCekvldsnGeakpi..sdkkdevedvIeplASdALR R+F+KGAsEI+lkkC+k+l++nGeak+++++d++d+v++vIep+AS++LR fk10614 261 RIFSKGASEIILKKCFKILSANGEAKVFrpRDRDDIVKTVIEPMASEGLR 310 ticLayrD.....elprkdspN...kgltliavvGIkDPvRpGVreavqe ticLa+rD + ++++p++d++N+ +glt+iavvGI+DPvRp+V++a+++ fk10614 311 TICLAFRDfpagePEPEWDNENdivTGLTCIAVVGIEDPVRPEVPDAIKK 360 CQrAGiTVRMVTGDNisTAkAIArnCgILtegg..lamEGkeFRk..... CQrAGiTVRMVTGDNi+TA+AIA++CgIL++g++ l++EGk+F+++ +++ fk10614 361 CQRAGITVRMVTGDNINTARAIATKCGILHPGEdfLCLEGKDFNRrirne 410 .........dkILPkLrVLARSsPlDKqLLVe......LkdmGeVVAVTG +++ ++++ dkI+PkLrVLARSsP+DK++LV++ +++++d+++VVAVTG fk10614 411 kgeieqeriDKIWPKLRVLARSSPTDKHTLVKgiidstVSDQRQVVAVTG 460 DGTNDAPALklAdVGFaMGIaGTeVAkeaSDIiLlDDNFaSIVrAVkWGR DGTND+PALk+AdVGFaMGIaGT+VAkeaSDIiL+DDNF+SIV+AV+WGR fk10614 461 DGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGR 510 nVydsIkKFlQFQLTVNVvAVivtFvGsciSstSPLtAVQLLWVNLIMDT nVydsI+KFlQFQLTVNVvAViv+F+G+ci+++SPL+AVQ+LWVNLIMDT fk10614 511 NVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDT 560 LAALALATEpPtEelLdRkPiGRnapLISRsMWknILgqAiYQLvvlfil LA+LALATEpPtE+lL+RkP+GRn+pLISR+++knILg+A+YQLvv+f+l fk10614 561 LASLALATEPPTESLLLRKPYGRNKPLISRTTMKNILGHAFYQLVVVFTL 610 lFaGeeiF..................TiVFNtFVllQlFneiNARkLe.e lFaGe++F+ +++++ + + +++++ TiVFNtFVl+QlFneiNARk+++e fk10614 611 LFAGEKFFdidsgrnaplhappsehyTIVFNTFVLMQLFNEINARKIHgE 660 lNvFeglFkRnaiFvaImlftfgvQViiVeFGGsffStvsLsieqWilcv +NvFeg+F+ naiF++I+l+tf+vQ+iiV+FGG++fS+++LsieqW++++ fk10614 661 RNVFEGIFN-NAIFCTIVLGTFVVQIIIVQFGGKPFSCSELSIEQWLWSI 709 llGmlSLilGvllrliPve<-* +lGm++L++G+l+++iP++ fk10614 710 FLGMGTLLWGQLISTIPTS 728 TIGR01494: domain 1 of 6, from 73 to 159: score 99.4, E = 3.5e-27 *->tliglwtffkiflralillviaiPiaLpvavtialavgdkrma...i t+i++ +f+k f++ +++lv+a+P++Lp+avti la++ k+m+++++ fk10614 73 TPIYIQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMkdnN 119 lvrslnalEelGqvdyicsDKTGTLTenkmtfkkvyigge<-* lvr+l+a+E++G +++icsDKTGTLT+n mt+++ yi+++ fk10614 120 LVRHLDACETMGNATAICSDKTGTLTMNRMTVVQAYINEK 159 TIGR01494: domain 4 of 6, from 339 to 389: score 70.2, E = 1.2e-18 *->ellGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAke +++++++ieDp+r++v+++I++++raGi+v+M+TGDn++TA+aIA fk10614 339 TCIAVVGIEDPVRPEVPDAIKKCQRAGITVRMVTGDNINTARAIATK 385 cglf<-* cg++ fk10614 386 CGIL 389 TIGR01494: domain 5 of 6, from 426 to 541: score 122.1, E = 5.1e-34 *->cglfARvsPeqKaeiVellqk.....rgaiVamiGDGaNDapALkaA ++++AR+sP++K ++V+ + +++ +++ ++Va++GDG+ND pALk+A fk10614 426 LRVLARSSPTDKHTLVKGIIDstvsdQRQVVAVTGDGTNDGPALKKA 472 DVGiaig......AkaaaDivltddnlslivlllvhGRwtykrikklily DVG+a+g +++ Ak+a+Di+ltddn+++iv+++ +GR++y+ i+k++++ fk10614 473 DVGFAMGiagtdvAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQF 522 alyynliliillfvlsvin<-* +l++n++++i++f +++i+ fk10614 523 QLTVNVVAVIVAFTGACIT 541 //