hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09463808/chunk_1/iprscan-20080811-09463808.nocrc
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Query sequence: fk10876
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00017.14.fs SH2 domain                                     199.0    1.3e-67   2
PF00017.14.ls SH2 domain                                     202.9    7.1e-58   2
PF00620.17.fs RhoGAP domain                                   36.5    1.7e-10   1
PF00620.17.ls RhoGAP domain                                   38.3    2.1e-08   1
PF00018.18.fs SH3 domain                                      20.0    0.00011   2
PF00018.18.ls SH3 domain                                      12.9    0.00083   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00018.18.ls   1/1      17    88 ..     1    59 []    12.9  0.00083
PF00620.17.fs   1/1     135   274 ..     1   155 []    36.5  1.7e-10
PF00620.17.ls   1/1     135   274 ..     1   155 []    38.3  2.1e-08
PF00017.14.ls   1/2     340   415 ..     1    82 []    94.3  3.5e-25
PF00017.14.fs   1/2     340   415 ..     1    82 []    92.3  3.9e-31
PF00017.14.fs   2/2     632   706 ..     1    82 []   106.7  4.9e-36
PF00017.14.ls   2/2     632   706 ..     1    82 []   108.6  1.7e-29

Alignments of top-scoring domains:
PF00018.18.ls: domain 1 of 1, from 17 to 88: score 12.9, E = 0.00083
                   *->kkvvALYDYearesdELsFkkGDvitvl.............eksdd.
                       +++ALY++  + +++L + +GDv+ v++   +  +  +++e+ + +
     fk10876    17    FQYRALYPFRRERPEDLELLPGDVLVVSraalqalgvaeggERCPQs 63   

                   pgWWkgrlkgtgGkeGliPsNYVepv<-*
                    gW  g + +t+ ++G +P +YVe     
     fk10876    64 VGWMPGLNERTR-QRGDFPGTYVEFL    88   

PF00620.17.fs: domain 1 of 1, from 135 to 274: score 36.5, E = 1.7e-10
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++++k++e++e+ GLd+E  yR    + r ++              
     fk10876   135    PPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLS----------- 170  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   d+++ d  ++A+  K FL  LP PL+t e+  e           +e    
     fk10876   171 DVDQWDTAALADGIKSFLLALPAPLVTPEASAEAR------RALREAAGP 214  

                   lrellr..kLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL
                   +  +l++++LP +   tLr+Ll hL rVa+++      +++L+  FgP L
     fk10876   215 VGPALEppTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLL 264  

                   lrppdgdsad<-*
                   lr p+  s+    
     fk10876   265 LRAPPPPSSP    274  

PF00620.17.ls: domain 1 of 1, from 135 to 274: score 38.3, E = 2.1e-08
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++++k++e++e+ GLd+E  yR    + r ++              
     fk10876   135    PPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLS----------- 170  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   d+++ d  ++A+  K FL  LP PL+t e+  e           +e    
     fk10876   171 DVDQWDTAALADGIKSFLLALPAPLVTPEASAEAR------RALREAAGP 214  

                   lrellr..kLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL
                   +  +l++++LP +   tLr+Ll hL rVa+++      +++L+  FgP L
     fk10876   215 VGPALEppTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLL 264  

                   lrppdgdsad<-*
                   lr p+  s+    
     fk10876   265 LRAPPPPSSP    274  

PF00017.14.ls: domain 1 of 2, from 340 to 415: score 94.3, E = 3.5e-25
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSes.tpGdYtLSVrddgp
                      Wy+G+IsR+e+ + L+    +dGtFLvR+ +s+ +G+YtL++r +g 
     fk10876   340    WYWGDISREEVNEKLRD--TPDGTFLVRDASSkIQGEYTLTLRKGG- 383  

                   qgdrVkHyrIqsldnggyyitggvk.FssLpeLvehY<-*
                      ++k +++   d+  +y + ++ +F+s+ +L++hY   
     fk10876   384 ---NNKLIKVFHRDG--HYGFSEPLtFCSVVDLINHY    415  

PF00017.14.fs: domain 1 of 2, from 340 to 415: score 92.3, E = 3.9e-31
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSes.tpGdYtLSVrddgp
                      Wy+G+IsR+e+ + L+    +dGtFLvR+ +s+ +G+YtL++r +g 
     fk10876   340    WYWGDISREEVNEKLRD--TPDGTFLVRDASSkIQGEYTLTLRKGG- 383  

                   qgdrVkHyrIqsldnggyyitggvk.FssLpeLvehY<-*
                      ++k +++   d+  +y + ++ +F+s+ +L++hY   
     fk10876   384 ---NNKLIKVFHRDG--HYGFSEPLtFCSVVDLINHY    415  

PF00017.14.fs: domain 2 of 2, from 632 to 706: score 106.7, E = 4.9e-36
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      Wy GkI+R +AE++L    ++dGtFL+ReS+ + G+Y++SV+ dg  
     fk10876   632    WYVGKINRTQAEEMLSG--KRDGTFLIRESS-QRGCYACSVVVDG-- 673  

                   gdrVkHyrIqsldnggyyitggvk..FssLpeLvehY<-*
                       kH++I ++++g  + + ++++ ++sL eLv hY   
     fk10876   674 --DTKHCVIYRTATG--FGFAEPYnlYGSLKELVLHY    706  

PF00017.14.ls: domain 2 of 2, from 632 to 706: score 108.6, E = 1.7e-29
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                      Wy GkI+R +AE++L    ++dGtFL+ReS+ + G+Y++SV+ dg  
     fk10876   632    WYVGKINRTQAEEMLSG--KRDGTFLIRESS-QRGCYACSVVVDG-- 673  

                   gdrVkHyrIqsldnggyyitggvk..FssLpeLvehY<-*
                       kH++I ++++g  + + ++++ ++sL eLv hY   
     fk10876   674 --DTKHCVIYRTATG--FGFAEPYnlYGSLKELVLHY    706  

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