hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09463808/chunk_1/iprscan-20080811-09463808.nocrc
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Query sequence: fk10876
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00252                                                 210.7    1.3e-58   2
SM00324                                                 104.3    1.4e-26   1
SM00326                                                  41.6    1.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/1      17    89 ..     1    58 []    41.6  1.1e-07
SM00324    1/1     132   302 ..     1   193 []   104.3  1.4e-26
SM00252    1/2     338   421 ..     1    87 []   103.4  2.6e-26
SM00252    2/2     630   712 ..     1    87 []   107.3  1.8e-27

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 17 to 89: score 41.6, E = 1.1e-07
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks...............d
                      ++++AlY++  + +++L + +GD++ v +   +  +  +++++ +++
     fk10876    17    FQYRALYPFRRERPEDLELLPGDVLVVSRAAlqalgvaeggercpqS 63   

                   dgWweGelnrtGkeGlfPsnYVeeie<-*
                    gW+ G + rt ++G fP++YVe +    
     fk10876    64 VGWMPGLNERTRQRGDFPGTYVEFLG    89   

SM00324: domain 1 of 1, from 132 to 302: score 104.3, E = 1.4e-26
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsgedd
                      +  P++++k++e++e+ Gld e  YR + ++ r+++ ++  d+    
     fk10876   132    DVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQ---- 174  

                   ldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefiea
                                    +d+ ++A+ +K++L  LP PL+t+e++ e ++a
     fk10876   175 -----------------WDTAALADGIKSFLLALPAPLVTPEASAEARRA 207  

                   aklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HLn
                    +                 e +   +  +   +LP +   tLr+Ll+HL 
     fk10876   208 LR-----------------EAAGPVGPALEPPTLPLHRALTLRFLLqHLG 240  

                   rVaehsevNkMtarNLAivFgPtLlrpp...............ltdikhq
                   rVa+ ++     +r+L+  FgP+Llr p++++++++++ +++++   +++
     fk10876   241 RVARRAPALGPAVRALGATFGPLLLRAPpppsspppggapdgsEPSPDFP 290  

                   nkvvetlienad<-*
                   + +ve l+++++   
     fk10876   291 ALLVEKLLQEHL    302  

SM00252: domain 1 of 2, from 338 to 421: score 103.4, E = 2.6e-26
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSes.spgdyvLSvrvk
                       +WY+G+isRee+ ++L+    pdGtFLvRd +s+  g+y+L++r +
     fk10876   338    AEWYWGDISREEVNEKLRD--TPDGTFLVRDASSkIQGEYTLTLRKG 382  

                   gkvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   g +k +++++ d g + + +  + +F+s+ +L++hY++ sl    
     fk10876   383 GNNKLIKVFHRD-GHYGFSE--PLTFCSVvDLINHYRHESLA    421  

SM00252: domain 2 of 2, from 630 to 712: score 107.3, E = 1.8e-27
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                        WY Gki+R +AE++L +  ++dGtFL+R+S++ +g+y+ Sv v+g
     fk10876   630    RTWYVGKINRTQAEEMLSG--KRDGTFLIRESSQ-RGCYACSVVVDG 673  

                   kvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                     kH++I rt+  +f +++ p   + sL+eLv hYq+ sl+   
     fk10876   674 DTKHCVIYRTA-TGFGFAE-PYNLYGSLkELVLHYQHASLV    712  

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