# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk10959.fasta.nr -Q fk10959.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk10959, 163 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840739 sequences Expectation_n fit: rho(ln(x))= 5.6038+/-0.000189; mu= 5.9177+/- 0.011 mean_var=87.8863+/-17.566, 0's: 38 Z-trim: 47 B-trim: 2051 in 1/65 Lambda= 0.136809 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088646|dbj|BAD92770.1| cAMP responsive elemen ( 163) 1054 216.8 1e-54 gi|109088713|ref|XP_001093063.1| PREDICTED: cAMP r ( 244) 1053 216.7 1.6e-54 gi|109088705|ref|XP_001092950.1| PREDICTED: cAMP r ( 269) 1053 216.7 1.7e-54 gi|109088693|ref|XP_001093168.1| PREDICTED: cAMP r ( 283) 1053 216.7 1.8e-54 gi|109088675|ref|XP_001092367.1| PREDICTED: cAMP r ( 299) 1053 216.8 1.9e-54 gi|34335222|ref|NP_898829.1| cAMP responsive eleme ( 299) 1053 216.8 1.9e-54 gi|8248905|gb|AAC60616.2| cyclic AMP-responsive el ( 332) 1053 216.8 2e-54 gi|119606325|gb|EAW85919.1| cAMP responsive elemen ( 332) 1053 216.8 2e-54 gi|109088689|ref|XP_001092480.1| PREDICTED: cAMP r ( 337) 1053 216.8 2e-54 gi|114630126|ref|XP_001149763.1| PREDICTED: simila ( 244) 1045 215.1 4.8e-54 gi|114630118|ref|XP_001149695.1| PREDICTED: cAMP r ( 269) 1045 215.2 5.1e-54 gi|114630108|ref|XP_001149827.1| PREDICTED: simila ( 283) 1045 215.2 5.3e-54 gi|114630122|ref|XP_001149407.1| PREDICTED: simila ( 293) 1045 215.2 5.5e-54 gi|114630096|ref|XP_001149629.1| PREDICTED: cAMP r ( 299) 1045 215.2 5.6e-54 gi|114630090|ref|XP_001149282.1| PREDICTED: simila ( 348) 1045 215.2 6.2e-54 gi|114630102|ref|XP_001149349.1| PREDICTED: simila ( 348) 1045 215.2 6.2e-54 gi|54072633|gb|AAV28556.1| cAMP response element m ( 327) 1043 214.8 7.8e-54 gi|148691115|gb|EDL23062.1| cAMP responsive elemen ( 329) 1043 214.8 7.9e-54 gi|149032588|gb|EDL87466.1| cAMP responsive elemen ( 336) 1043 214.8 8e-54 gi|55660892|emb|CAH72496.1| cAMP responsive elemen ( 333) 1041 214.4 1e-53 gi|109088687|ref|XP_001088981.1| PREDICTED: cAMP r ( 338) 1041 214.4 1.1e-53 gi|126341172|ref|XP_001366047.1| PREDICTED: simila ( 299) 1033 212.8 2.9e-53 gi|114630092|ref|XP_001147722.1| PREDICTED: simila ( 349) 1033 212.9 3.2e-53 gi|149634759|ref|XP_001508739.1| PREDICTED: simila ( 318) 1009 208.1 8e-52 gi|109088711|ref|XP_001091309.1| PREDICTED: cAMP r ( 244) 965 199.3 2.7e-49 gi|31376255|gb|AAP44115.1| cAMP responsive element ( 245) 965 199.3 2.7e-49 gi|109088703|ref|XP_001090477.1| PREDICTED: cAMP r ( 269) 965 199.4 2.9e-49 gi|55660895|emb|CAH72499.1| cAMP responsive elemen ( 270) 965 199.4 2.9e-49 gi|109088691|ref|XP_001090595.1| PREDICTED: cAMP r ( 283) 965 199.4 3e-49 gi|109088673|ref|XP_001090366.1| PREDICTED: cAMP r ( 299) 965 199.4 3.2e-49 gi|34335186|ref|NP_853549.1| cAMP responsive eleme ( 300) 965 199.4 3.2e-49 gi|55660893|emb|CAH72497.1| cAMP responsive elemen ( 333) 965 199.4 3.4e-49 gi|8248902|gb|AAC60617.2| cyclic AMP-responsive el ( 333) 965 199.4 3.4e-49 gi|109088685|ref|XP_001090136.1| PREDICTED: cAMP r ( 337) 965 199.4 3.5e-49 gi|114630124|ref|XP_001149141.1| PREDICTED: cAMP r ( 245) 957 197.8 8.1e-49 gi|114630116|ref|XP_001148567.1| PREDICTED: cAMP r ( 270) 957 197.8 8.7e-49 gi|114630094|ref|XP_001148504.1| PREDICTED: cAMP r ( 300) 957 197.8 9.4e-49 gi|114630100|ref|XP_001148224.1| PREDICTED: simila ( 349) 957 197.9 1.1e-48 gi|114630088|ref|XP_001148291.1| PREDICTED: simila ( 349) 957 197.9 1.1e-48 gi|126341166|ref|XP_001366107.1| PREDICTED: simila ( 269) 950 196.4 2.3e-48 gi|126341164|ref|XP_001365987.1| PREDICTED: simila ( 299) 950 196.4 2.5e-48 gi|189516163|ref|XP_683024.3| PREDICTED: wu:fk66d0 ( 300) 802 167.2 1.5e-39 gi|31323967|gb|AAP47151.1| cAMP response element-b ( 327) 752 157.4 1.5e-36 gi|4586434|dbj|BAA36482.1| CREB [Taeniopygia gutta ( 327) 752 157.4 1.5e-36 gi|1134859|emb|CAA63242.1| unnamed protein product ( 287) 748 156.6 2.4e-36 gi|74005257|ref|XP_860463.1| PREDICTED: similar to ( 309) 748 156.6 2.5e-36 gi|148667786|gb|EDL00203.1| cAMP responsive elemen ( 318) 748 156.6 2.6e-36 gi|74005255|ref|XP_860428.1| PREDICTED: similar to ( 319) 748 156.6 2.6e-36 gi|114582952|ref|XP_001139927.1| PREDICTED: cAMP r ( 323) 748 156.6 2.6e-36 gi|286|emb|CAA40347.1| CREB2 [Bos taurus] gi|2 ( 325) 748 156.6 2.6e-36 >>gi|62088646|dbj|BAD92770.1| cAMP responsive element mo (163 aa) initn: 1054 init1: 1054 opt: 1054 Z-score: 1137.5 bits: 216.8 E(): 1e-54 Smith-Waterman score: 1054; 100.000% identity (100.000% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNSGAPPPGATIVQYAAQSADGTQQFFVPGSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VAIAQGGTIQISNPGSDGVQGLQALTMTNSGAPPPGATIVQYAAQSADGTQQFFVPGSQV 10 20 30 40 50 60 70 80 90 100 110 120 fk1095 VVQAATGDMPTYQIRAPTAALPQGVVMAASPGSLHSPQQLAEEATRKRELRLMKNREAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VVQAATGDMPTYQIRAPTAALPQGVVMAASPGSLHSPQQLAEEATRKRELRLMKNREAAR 70 80 90 100 110 120 130 140 150 160 fk1095 ECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKVE ::::::::::::::::::::::::::::::::::::::::::: gi|620 ECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKVE 130 140 150 160 >>gi|109088713|ref|XP_001093063.1| PREDICTED: cAMP respo (244 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1134.1 bits: 216.7 E(): 1.6e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:82-244) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|109 EEKSEEEGTPPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 60 70 80 90 100 110 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 120 130 140 150 160 170 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 180 190 200 210 220 230 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|109 LKALKDLYCHKVE 240 >>gi|109088705|ref|XP_001092950.1| PREDICTED: cAMP respo (269 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1133.5 bits: 216.7 E(): 1.7e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:107-269) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|109 EEKSEEEGTPPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 80 90 100 110 120 130 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 140 150 160 170 180 190 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 200 210 220 230 240 250 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|109 LKALKDLYCHKVE 260 >>gi|109088693|ref|XP_001093168.1| PREDICTED: cAMP respo (283 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1133.2 bits: 216.7 E(): 1.8e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:121-283) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|109 EEKSEEEGTPPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 100 110 120 130 140 150 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 160 170 180 190 200 210 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 220 230 240 250 260 270 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|109 LKALKDLYCHKVE 280 >>gi|109088675|ref|XP_001092367.1| PREDICTED: cAMP respo (299 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1132.8 bits: 216.8 E(): 1.9e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:137-299) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|109 EEKSEEEGTPPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 110 120 130 140 150 160 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 170 180 190 200 210 220 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 230 240 250 260 270 280 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|109 LKALKDLYCHKVE 290 >>gi|34335222|ref|NP_898829.1| cAMP responsive element m (299 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1132.8 bits: 216.8 E(): 1.9e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:137-299) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|343 EERSEEEGTPPSIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 110 120 130 140 150 160 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 170 180 190 200 210 220 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 230 240 250 260 270 280 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|343 LKALKDLYCHKVE 290 >>gi|8248905|gb|AAC60616.2| cyclic AMP-responsive elemen (332 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1132.2 bits: 216.8 E(): 2e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:170-332) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|824 EERSEEEGTPPSIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 140 150 160 170 180 190 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|824 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 200 210 220 230 240 250 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|824 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 260 270 280 290 300 310 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|824 LKALKDLYCHKVE 320 330 >>gi|119606325|gb|EAW85919.1| cAMP responsive element mo (332 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1132.2 bits: 216.8 E(): 2e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:170-332) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|119 EERSEEEGTPPSIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 140 150 160 170 180 190 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 200 210 220 230 240 250 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 260 270 280 290 300 310 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|119 LKALKDLYCHKVE 320 330 >>gi|109088689|ref|XP_001092480.1| PREDICTED: cAMP respo (337 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1132.1 bits: 216.8 E(): 2e-54 Smith-Waterman score: 1053; 99.387% identity (100.000% similar) in 163 aa overlap (1-163:175-337) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|109 EEKSEEEGTPPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 150 160 170 180 190 200 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS 210 220 230 240 250 260 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 270 280 290 300 310 320 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|109 LKALKDLYCHKVE 330 >>gi|114630126|ref|XP_001149763.1| PREDICTED: similar to (244 aa) initn: 1045 init1: 1045 opt: 1045 Z-score: 1125.5 bits: 215.1 E(): 4.8e-54 Smith-Waterman score: 1045; 98.773% identity (99.387% similar) in 163 aa overlap (1-163:82-244) 10 20 30 fk1095 VAIAQGGTIQISNPGSDGVQGLQALTMTNS .::::::::::::::::::::::::::::: gi|114 EERSEEEGTPPSIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDGVQGLQALTMTNS 60 70 80 90 100 110 40 50 60 70 80 90 fk1095 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQAATGDMPTYQIRAPTAALPQGVVMAAS :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|114 GAPPPGATIVQYAAQSADGTQQFFVPGSQVVVPAATGDMPTYQIRAPTAALPQGVVMAAS 120 130 140 150 160 170 100 110 120 130 140 150 fk1095 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PGSLHSPQQLAEEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 180 190 200 210 220 230 160 fk1095 LKALKDLYCHKVE ::::::::::::: gi|114 LKALKDLYCHKVE 240 163 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 09:50:31 2008 done: Mon Aug 11 09:53:29 2008 Total Scan time: 597.530 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]