hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09533146/chunk_1/iprscan-20080811-09533146.nocrc
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Query sequence: fk10959
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00170.11.fs bZIP transcription factor                       78.1    1.5e-21   1
PF00170.11.ls bZIP transcription factor                       80.0    6.9e-21   1
PF07716.5.ls Basic region leucine zipper                     26.5    8.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00170.11.fs   1/1     103   163 .]     1    65 []    78.1  1.5e-21
PF00170.11.ls   1/1     103   163 .]     1    65 []    80.0  6.9e-21
PF07716.5.ls   1/1     104   157 ..     1    57 []    26.5  8.5e-05

Alignments of top-scoring domains:
PF00170.11.fs: domain 1 of 1, from 103 to 163: score 78.1, E = 1.5e-21
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      e+ +Kre+R++kNReAAr++R++K++++++Le++v++Le++Nk+L++
     fk10959   103    EATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIE 149  

                   elerLkkevakLksenee<-*
                   el+ Lk++++    ++ e   
     fk10959   150 ELKALKDLYC----HKVE    163  

PF00170.11.ls: domain 1 of 1, from 103 to 163: score 80.0, E = 6.9e-21
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      e+ +Kre+R++kNReAAr++R++K++++++Le++v++Le++Nk+L++
     fk10959   103    EATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIE 149  

                   elerLkkevakLksenee<-*
                   el+ Lk++++    ++ e   
     fk10959   150 ELKALKDLYC----HKVE    163  

PF07716.5.ls: domain 1 of 1, from 104 to 157: score 26.5, E = 8.5e-05
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                       + +++ r + +N+eAA+ +R KkK++ + le+rv  Le +N +L  
     fk10959   104    ATRKRELRLM-KNREAARECRRKKKEYVKCLENRVAVLENQNKTL-- 147  

                   rqkveqLekE<-*
                    +++++L++    
     fk10959   148 IEELKALKDL    157  

//