hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09593400/chunk_1/iprscan-20080811-09593400.nocrc
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Query sequence: fk11001
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00183.9.fs Hsp90 protein                                 695.4   3.9e-206   1
PF00183.9.ls Hsp90 protein                                 386.9   2.7e-113   1
PF02518.16.fs Histidine kinase-, DNA gyrase B-, and HSP90    53.7    7.5e-15   1
PF02518.16.ls Histidine kinase-, DNA gyrase B-, and HSP90    55.5    1.6e-13   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02518.16.fs   1/1     122   280 ..     1   127 []    53.7  7.5e-15
PF02518.16.ls   1/1     122   280 ..     1   127 []    55.5  1.6e-13
PF00183.9.fs   1/1     283   575 ..     1   317 [.   695.4 3.9e-206
PF00183.9.ls   1/1     283   576 .]     1   550 []   386.9 2.7e-113

Alignments of top-scoring domains:
PF02518.16.fs: domain 1 of 1, from 122 to 280: score 53.7, E = 7.5e-15
                   *->gdedrLrqvlsNLldNAikhapag..........geitvrlerdgdr
                      + e++Lr+++sN+ d   k    + ++++  +++ e+tv+++ d++ 
     fk11001   122    NKEIFLRELISNASDALDKIRLISltdenalsgnEELTVKIKCDKEK 168  

                   lritVeDnGpGIppe.hk........isa.edleriFepFyrtdgpsaes
                     + V+D+G+G++ e+++++ ++  +  ++e l+++ e   + dg     
     fk11001   169 NLLHVTDTGVGMTREeLVknlgtiakSGTsEFLNKMTE--AQEDG----- 211  

                   ladsr.rkigGGLtGLGLaivkelvelhgGtitvesep............
                     +s+++ ig+  +G+G++ +  +++++ +t    s+ ++++++  ++++
     fk11001   212 --QSTsELIGQ--FGVGFYSAFLVADKVIVT----SKHnndtqhiwesds 253  

                   ..............ggGttftltlPla<-*
                   ++ +   ++++++ g+Gtt+tl l+++   
     fk11001   254 nefsviadprgntlGRGTTITLVLKEE    280  

PF02518.16.ls: domain 1 of 1, from 122 to 280: score 55.5, E = 1.6e-13
                   *->gdedrLrqvlsNLldNAikhapag..........geitvrlerdgdr
                      + e++Lr+++sN+ d   k    + ++++  +++ e+tv+++ d++ 
     fk11001   122    NKEIFLRELISNASDALDKIRLISltdenalsgnEELTVKIKCDKEK 168  

                   lritVeDnGpGIppe.hk........isa.edleriFepFyrtdgpsaes
                     + V+D+G+G++ e+++++ ++  +  ++e l+++ e   + dg     
     fk11001   169 NLLHVTDTGVGMTREeLVknlgtiakSGTsEFLNKMTE--AQEDG----- 211  

                   ladsr.rkigGGLtGLGLaivkelvelhgGtitvesep............
                     +s+++ ig+  +G+G++ +  +++++ +t    s+ ++++++  ++++
     fk11001   212 --QSTsELIGQ--FGVGFYSAFLVADKVIVT----SKHnndtqhiwesds 253  

                   ..............ggGttftltlPla<-*
                   ++ +   ++++++ g+Gtt+tl l+++   
     fk11001   254 nefsviadprgntlGRGTTITLVLKEE    280  

PF00183.9.fs: domain 1 of 1, from 283 to 575: score 695.4, E = 3.9e-206
                   *->EYLEerrlKelVKKhSEFInYPIyLwveKevekEVpdeEeEeekeek
                      +YLE++++K+lVKK+S+FIn+PIy+w++K++++E+p+eEeE++keek
     fk11001   283    DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEK 329  

                   eeeeektedpkidDkepkeEEedeeeekeEKKkKtKKVkEtttEwElLNk
                   ee++               +E+++eee+eEKK+KtKKV++t+++wEl+N+
     fk11001   330 EESD---------------DEAAVEEEEEEKKPKTKKVEKTVWDWELMND 364  

                   tKPIWtRnPkdvTkEEYaaFYKSLtnDweDekpLAvkHFSVEGqLEFkAi
                   +KPIW+R++k+v+++EY+aFYKS++++++D  p+A++HF++EG+++Fk+i
     fk11001   365 IKPIWQRPSKEVEEDEYKAFYKSFSKESDD--PMAYIHFTAEGEVTFKSI 412  

                   LFVPkrAPfDLFEskynkkknNIKLYVRRVFImDdcedLiPeyLsFvKGV
                   LFVP++AP++LF+++++kk+++IKLYVRRVFI+Dd++d++P+yL+FvKGV
     fk11001   413 LFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGV 462  

                   VDSEDLPLNiSREmLQQnKiLKVIRKnLVkKcLelfneiAeedPdeEdKe
                   VDS+DLPLN+SRE+LQQ+K+LKVIRK+LV+K+L+++++iA      +dK+
     fk11001   463 VDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIA------DDKY 506  

                   nYkkFYeeFsKNiKLGihEDaaNRakLAkLLRFeStkSgdeltSLkdYVt
                   n ++F++eF++NiKLG++ED++NR++LAkLLRF+S++++ ++tSL++YV+
     fk11001   507 N-DTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPTDITSLDQYVE 555  

                   RMKegQkdIYYITGeSKkqv<-*
                   RMKe+Q++IY+++G+S+k+v   
     fk11001   556 RMKEKQDKIYFMAGSSRKEV    575  

PF00183.9.ls: domain 1 of 1, from 283 to 576: score 386.9, E = 2.7e-113
                   *->EYLEerrlKelVKKhSEFInYPIyLwveKevekEVpdeEeEeekeek
                      +YLE++++K+lVKK+S+FIn+PIy+w++K++++E+p+eEeE++keek
     fk11001   283    DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEK 329  

                   eeeeektedpkidDkepkeEEedeeeekeEKKkKtKKVkEtttEwElLNk
                   ee++               +E+++eee+eEKK+KtKKV++t+++wEl+N+
     fk11001   330 EESD---------------DEAAVEEEEEEKKPKTKKVEKTVWDWELMND 364  

                   tKPIWtRnPkdvTkEEYaaFYKSLtnDweDekpLAvkHFSVEGqLEFkAi
                   +KPIW+R++k+v+++EY+aFYKS++++++D  p+A++HF++EG+++Fk+i
     fk11001   365 IKPIWQRPSKEVEEDEYKAFYKSFSKESDD--PMAYIHFTAEGEVTFKSI 412  

                   LFVPkrAPfDLFEskynkkknNIKLYVRRVFImDdcedLiPeyLsFvKGV
                   LFVP++AP++LF+++++kk+++IKLYVRRVFI+Dd++d++P+yL+FvKGV
     fk11001   413 LFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGV 462  

                   VDSEDLPLNiSREmLQQnKiLKVIRKnLVkKcLelfneiAeedPdeEdKe
                   VDS+DLPLN+SRE+LQQ+K+LKVIRK+LV+K+L+++++iA      +dK+
     fk11001   463 VDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIA------DDKY 506  

                   nYkkFYeeFsKNiKLGihEDaaNRakLAkLLRFeStkSgdeltSLkdYVt
                   n ++F++eF++NiKLG++ED++NR++LAkLLRF+S++++ ++tSL++YV+
     fk11001   507 N-DTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPTDITSLDQYVE 555  

                   RMKegQkdIYYITGeSKkqvekSPFlErLkkKgyEVlymtdPiDEYaiqq
                   RMKe+Q++IY+++G+S+k+v                              
     fk11001   556 RMKEKQDKIYFMAGSSRKEV------------------------------ 575  

                   LkEFEGKkLvnvTKEGLeLeEsEeeKkkrEelkkefEeLckwmKeaiLgd
                                                                     
     fk11001   576 --------------------------------------------R----- 576  

                   kVEKVvVSnRLvdSPCalvTSqYGWSANMERIMKAQALrDsSmsaYmssK
                                                                     
     fk11001     - -------------------------------------------------- -    

                   KtlEINPrhPIIkeLrkrveaDknDktVKDLvvLLyeTALLtSGFsLedP
                                                                     
     fk11001     - -------------------------------------------------- -    

                   kafAsRIyRmiklGLsIDeDeeveeedeveeaeveetepaeedaedskmE
                                                                     
     fk11001     - -------------------------------------------------- -    

                   evD<-*
                         
     fk11001     - ---    -    

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