hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-09593400/chunk_1/iprscan-20080811-09593400.nocrc
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Query sequence: fk11001
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00387                                                  45.8    5.9e-09   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00387      1/1     122   281 ..     1   130 []    45.8  5.9e-09

Alignments of top-scoring domains:
SM00387: domain 1 of 1, from 122 to 281: score 45.8, E = 5.9e-09
                   *->gDpdrLrqvlsNLldNAikftpegladskllsgkdgggtitvsle..
                      + +++Lr+++sN+ d   k    +l+d+     ++g+ ++tv+++ +
     fk11001   122    NKEIFLRELISNASDALDKIRLISLTDEN---ALSGNEELTVKIKcd 165  

                   ....vitVeDnGpGIppeih.k........si.edleriFepFfrtdgsp
                   ++++ + V+D+G+G++ e++ k+ ++  ++ ++e l+++ e+  + dg  
     fk11001   166 keknLLHVTDTGVGMTREELvKnlgtiaksGTsEFLNKMTEA--QEDG-- 211  

                   srdrpgsrsrktgGGLtGLGLaivkrlvelhgGeisve............
                        +s+s  +g+  +G+G++ +  ++++  ++ + +++++   +++++
     fk11001   212 -----QSTSELIGQ--FGVGFYSAFLVADKVIVTSKHNndtqhiwesdsn 254  

                   ................ttFtitlPlel<-*
                   + +   ++++++ +++tt+t+ l+ e+   
     fk11001   255 efsviadprgntlgrgTTITLVLKEEA    281  

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