hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-10054995/chunk_1/iprscan-20080811-10054995.nocrc
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Query sequence: fk11053
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 254.7    7.3e-72   1
SM00219                                                 -71.8    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      98   414 ..     1   280 []   -71.8  1.1e-06
SM00220    1/1      98   414 ..     1   231 []   254.7  7.3e-72

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 98 to 414: score -71.8, E = 1.1e-06
                   *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda..keeFlrEa
                       +    LGeG FG+V+++    +++ +VA K +++  + +e+ + E+
     fk11053    98    YEIVGNLGEGTFGKVVECLDHargkSQVALKIIRNVGkyREAARLEI 144  

                   kiMkklGgkHpNiVkLlGvcteegrr.FmevePlmivmEymegGdLldyL
                   +++kk+ ++ +   k+l v +++  +     + ++i +E+  + +  ++L
     fk11053   145 NVLKKI-KEKDKENKFLCVLMSDWFNfH---GHMCIAFELLGK-NTFEFL 189  

                   rknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk..
                   ++n  ++ +l++  ++A+Q +   ++L+++++ H DL   N+L  +   +
     fk11053   190 KENNFQpYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEfe 239  

                   .................vvKIsDFGLsRdlyddDkkGeskdyYrkkggkg
                   +  +++++ ++++ +++ ++++DFG + + +++      + +++++   +
     fk11053   240 tlynehksceeksvkntSIRVADFGSATFDHEH------HTTIVATR--H 281  

                   gktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqq
                    +        +PE++ +       DVWS G  L+E        Y g    
     fk11053   282 YR--------PPEVILELGWAQPCDVWSIGCILFE-------YYRG---- 312  

                   fmsneevleylkkGyRlpkPendlpiS.......................
                     + ++ +e+ ++  +++k     pi ++  +++++++   +++   +++
     fk11053   313 -FTLFQTHENREHLVMMEKILG--PIPshmihrtrkqkyfykgglvwden 359  

                   .....................svtCPdelYdlMlqCWaedPedRPtFsel
                   +++++  +++ ++ ++   ++s + +  l+dlM++  ++dP++R t +e 
     fk11053   360 ssdgryvkenckplksymlqdSLE-HVQLFDLMRRMLEFDPAQRITLAEA 408  

                   ..verl<-*
                     + ++   
     fk11053   409 llHPFF    414  

SM00220: domain 1 of 1, from 98 to 414: score 254.7, E = 7.3e-72
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik......erilrEi
                      Ye++  lG+G+FGkV  + d+ + + +vA+K+i++ ++ +e ++ Ei
     fk11053    98    YEIVGNLGEGTFGKVVECLDHArGKSQVALKIIRnvgkyrEAARLEI 144  

                   kiLkk.......dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                   ++Lkk +++++++    V + d+f  ++++++ +E+++    + f++lk+
     fk11053   145 NVLKKikekdkeNKFLCVLMSDWFNFhGHMCIAFELLGK---NTFEFLKE 191  

                   rgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..
                   ++ ++    ++ +++r++++Q++ aL +LH+++  H DLKPeNiL+ +++
     fk11053   192 NNFQP----YPLpHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNse 237  

                   ...................hvKlaDFGlArql....ttfvGTpeYmAPEv
                    ++  +++++ ++++ +++ + +aDFG+A++ ++++tt+v T++Y++PEv
     fk11053   238 fetlynehksceeksvkntSIRVADFGSATFDhehhTTIVATRHYRPPEV 287  

                   l...gYgkpavDiWSlGcilyElltGkpPFp.....qldlifkkig....
                   + + g+   ++D+WS+Gcil+E + G ++F++++++++ ++++ki+++ +
     fk11053   288 IlelGWAQ-PCDVWSIGCILFEYYRGFTLFQthenrEHLVMMEKILgpip 336  

                   ...............................................Spe
                   ++  +++++ ++ ++++  ++++++++++ +++ ++ +++   ++ +  +
     fk11053   337 shmihrtrkqkyfykgglvwdenssdgryvkenckplksymlqdsleHVQ 386  

                   akdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   + dL++++L++dP++R+t  eaL        HPff   
     fk11053   387 LFDLMRRMLEFDPAQRITLaEALL-------HPFF    414  

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