hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-10113228/chunk_1/iprscan-20080811-10113228.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk11077 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 282.4 7.9e-82 3 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 282.0 1e-81 3 PF00625.11.ls Guanylate kinase 212.7 7.8e-61 1 PF00625.11.fs Guanylate kinase 210.8 3e-60 1 PF00018.18.fs SH3 domain 31.9 6.2e-08 1 PF07653.7.fs Variant SH3 domain 26.7 4.9e-07 1 PF07653.7.ls Variant SH3 domain 28.5 2.2e-05 1 PF00018.18.ls SH3 domain 23.2 6.9e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.ls 1/3 1 79 [. 1 86 [] 82.8 9.5e-22 PF00595.14.fs 1/3 1 79 [. 9 86 .] 87.2 7.4e-24 PF00595.14.fs 2/3 90 174 .. 1 86 [] 98.7 4.3e-27 PF00595.14.ls 2/3 90 174 .. 1 86 [] 100.7 4.1e-27 PF00595.14.ls 3/3 237 315 .. 1 86 [] 98.5 1.8e-26 PF00595.14.fs 3/3 237 315 .. 1 86 [] 96.6 1.7e-26 PF00018.18.ls 1/1 355 421 .. 1 59 [] 23.2 6.9e-05 PF00018.18.fs 1/1 355 398 .. 1 40 [. 31.9 6.2e-08 PF07653.7.ls 1/1 356 420 .. 1 69 [] 28.5 2.2e-05 PF07653.7.fs 1/1 356 420 .. 1 69 [] 26.7 4.9e-07 PF00625.11.fs 1/1 530 632 .. 1 107 [] 210.8 3e-60 PF00625.11.ls 1/1 530 632 .. 1 107 [] 212.7 7.8e-61 Alignments of top-scoring domains: PF00595.14.ls: domain 1 of 3, from 1 to 79: score 82.8, E = 9.5e-22 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag +++glGfsi+gg+d+++ ++d +if+++++ G gaA+++ fk11077 1 --------GNSGLGFSIAGGTDNPHigdDSSIFITKIITG-GAAAQD 38 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* GrL+++D Il+vN +d+++++h +av+alk++g+ v+L v+ fk11077 39 GRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGS-IVRLYVK 79 PF00595.14.fs: domain 1 of 3, from 1 to 79: score 87.2, E = 7.4e-24 *->krgglGfsikggsdkga...dkgifvsevlpGsgaAeagGrLqaGDq +++glGfsi+gg+d+++ ++d +if+++++ G gaA+++GrL+++D fk11077 1 GNSGLGFSIAGGTDNPHigdDSSIFITKIITG-GAAAQDGRLRVNDC 46 IlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* Il+vN +d+++++h +av+alk++g+ v+L v+ fk11077 47 ILRVNEVDVRDVTHSKAVEALKEAGS-IVRLYVK 79 PF00595.14.fs: domain 2 of 3, from 90 to 174: score 98.7, E = 4.3e-27 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag e++l k ++ glGfsi+gg ++++ ++d++i+v+++++G gaA+++ fk11077 90 EIKLIK--GPKGLGFSIAGGVGNQHipgDNSIYVTKIIEG-GAAHKD 133 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* G+Lq+GD++l+vN++ le ++heeav alk++++ v L+v+ fk11077 134 GKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLKVA 174 PF00595.14.ls: domain 2 of 3, from 90 to 174: score 100.7, E = 4.1e-27 *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag e++l k ++ glGfsi+gg ++++ ++d++i+v+++++G gaA+++ fk11077 90 EIKLIK--GPKGLGFSIAGGVGNQHipgDNSIYVTKIIEG-GAAHKD 133 GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* G+Lq+GD++l+vN++ le ++heeav alk++++ v L+v+ fk11077 134 GKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLKVA 174 PF00595.14.ls: domain 3 of 3, from 237 to 315: score 98.5, E = 1.8e-26 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v+l++ + glGf+i+gg+d+ +gif+s +l+G g+A+ +G+L fk11077 237 KVVLHR--GSTGLGFNIVGGEDG---EGIFISFILAG-GPADLSGEL 277 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I+svN +dl+ she+a++alk++g+ vt++ + fk11077 278 RKGDRIISVNSVDLRAASHEQAAAALKNAGQ-AVTIVAQ 315 PF00595.14.fs: domain 3 of 3, from 237 to 315: score 96.6, E = 1.7e-26 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v+l++ + glGf+i+gg+d+ +gif+s +l+G g+A+ +G+L fk11077 237 KVVLHR--GSTGLGFNIVGGEDG---EGIFISFILAG-GPADLSGEL 277 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I+svN +dl+ she+a++alk++g+ vt++ + fk11077 278 RKGDRIISVNSVDLRAASHEQAAAALKNAGQ-AVTIVAQ 315 PF00018.18.ls: domain 1 of 1, from 355 to 421: score 23.2, E = 6.9e-05 *->kkvvALYDYeare.....sdELsFkkGDvitvleksddpgWWkgrlk +v+AL+DY+++ +++ +s+ L Fk GD+++v++ sdd +WW +r fk11077 355 LYVRALFDYDKTKdsglpSQGLNFKFGDILHVINASDD-EWWQARQV 400 gtgG...keGliPsN.YVepv<-* + G+++++G iPs + Ve++ fk11077 401 TPDGesdEVGVIPSKrRVEKK 421 PF00018.18.fs: domain 1 of 1, from 355 to 398: score 31.9, E = 6.2e-08 *->kkvvALYDYeare.....sdELsFkkGDvitvleksddpgWWkgr<- +v+AL+DY+++ +++ +s+ L Fk GD+++v++ sdd +WW +r fk11077 355 LYVRALFDYDKTKdsglpSQGLNFKFGDILHVINASDD-EWWQAR 398 * fk11077 - - PF07653.7.ls: domain 1 of 1, from 356 to 420: score 28.5, E = 2.2e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe y+ra++dy+ t+ ++ l + L++k Gd+++Vi + +dd+ww+ fk11077 356 YVRALFDYDK-TKDSG-LPSQGLNFKFGDILHVI----NASDDEWWQ 396 geslgg.....GrrrRGlvPssaveel<-* ++ +++++ ++ G++Ps+ + e fk11077 397 ARQ-VTpdgesDEV--GVIPSKRRVEK 420 PF07653.7.fs: domain 1 of 1, from 356 to 420: score 26.7, E = 4.9e-07 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe y+ra++dy+ t+ ++ l + L++k Gd+++Vi + +dd+ww+ fk11077 356 YVRALFDYDK-TKDSG-LPSQGLNFKFGDILHVI----NASDDEWWQ 396 geslgg.....GrrrRGlvPssaveel<-* ++ +++++ ++ G++Ps+ + e fk11077 397 ARQ-VTpdgesDEV--GVIPSKRRVEK 420 PF00625.11.fs: domain 1 of 1, from 530 to 632: score 210.8, E = 3e-60 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TRp+R +EvdG+DYhFV+SrE+mekdI+ ++F+E++++n+++YGTs+ fk11077 530 TRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSV 576 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL ++Vr+va++Gk+ciLDv+ +++k+l+ a+l+ P+s+FI+P+S +e+ + fk11077 577 QSVREVAEKGKHCILDVSGNAIKRLQIAQLY-PISIFIKPKS---MENIM 622 rgrnketEEs<-* +++++ tEE+ fk11077 623 EMNKRLTEEQ 632 PF00625.11.ls: domain 1 of 1, from 530 to 632: score 212.7, E = 7.8e-61 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TRp+R +EvdG+DYhFV+SrE+mekdI+ ++F+E++++n+++YGTs+ fk11077 530 TRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSV 576 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL ++Vr+va++Gk+ciLDv+ +++k+l+ a+l+ P+s+FI+P+S +e+ + fk11077 577 QSVREVAEKGKHCILDVSGNAIKRLQIAQLY-PISIFIKPKS---MENIM 622 rgrnketEEs<-* +++++ tEE+ fk11077 623 EMNKRLTEEQ 632 //