hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-10113228/chunk_1/iprscan-20080811-10113228.nocrc
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Query sequence: fk11077
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 270.4    1.4e-76   3
SM00072                                                 267.7    9.3e-76   1
SM00326                                                  47.5    1.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/3       3    82 ..     1    80 []    91.0  1.4e-22
SM00228    2/3      98   177 ..     1    80 []    89.2    5e-22
SM00228    3/3     245   318 ..     1    80 []    90.2  2.5e-22
SM00326    1/1     355   421 ..     1    58 []    47.5  1.8e-09
SM00072    1/1     496   675 ..     1   203 []   267.7  9.3e-76

Alignments of top-scoring domains:
SM00228: domain 1 of 3, from 3 to 82: score 91.0, E = 1.4e-22
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                       glGfsi+g++++++ ++++ if+++++ G++Aa++Gr     L+v+
     fk11077     3    SGLGFSIAGgtdnphigddsSIFITKIITGGAAAQDGR-----LRVN 44   

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   D Il+VN  ++v+++th  av++lk+ag       v+L v+R++   
     fk11077    45 DCILRVNE-VDVRDVTHSKAVEALKEAGS-----IVRLYVKRRK    82   

SM00228: domain 2 of 3, from 98 to 177: score 89.2, E = 5e-22
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                      +glGfsi+g+ ++++ ++++ i+v+++++G++A+k+G+     L++G
     fk11077    98    KGLGFSIAGgvgnqhipgdnSIYVTKIIEGGAAHKDGK-----LQIG 139  

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   D++l+VN+ + +e +theeav +lk++++      v L+v ++    
     fk11077   140 DKLLAVNN-VCLEEVTHEEAVTALKNTSD-----FVYLKVAKPT    177  

SM00228: domain 3 of 3, from 245 to 318: score 90.2, E = 2.5e-22
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                       glGf+ivg+++++gif+s +++G+pA+ +G      L++GD+I++V
     fk11077   245    TGLGFNIVGgedgeGIFISFILAGGPADLSGE-----LRKGDRIISV 286  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   N  ++++ ++he+a+++lk+ag+      vt++ ++++   
     fk11077   287 NS-VDLRAASHEQAAAALKNAGQ-----AVTIVAQYRP    318  

SM00326: domain 1 of 1, from 355 to 421: score 47.5, E = 1.8e-09
                   *->eyvvAlYDyea.....qnedELsFkkGDiitvleksddgWweGelnr
                       yv+Al+Dy+ +++++  ++ L Fk GDi++v++ sdd+Ww+++  +
     fk11077   355    LYVRALFDYDKtkdsgLPSQGLNFKFGDILHVINASDDEWWQARQVT 401  

                   ....tGkeGlfPsnYVeeie<-*
                   +++++ ++G +Ps    e++   
     fk11077   402 pdgeSDEVGVIPSKRRVEKK    421  

SM00072: domain 1 of 1, from 496 to 675: score 267.7, E = 9.3e-76
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      + Rp++++Gp    K++++++L++e+Pd  kfg +V+hTTRp+R +E
     fk11077   496    YTRPVIILGP---MKDRINDDLISEFPD--KFGSCVPHTTRPKRDYE 537  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                   v+G  +DYhFv+++e++e+di+++kf+E g+y+++ +YGTs++svr+vae
     fk11077   538 VDG--RDYHFVTSREQMEKDIQEHKFIEAGQYNNH-LYGTSVQSVREVAE 584  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgaeq
                   kGKhc+LD++ +++k+l+ a    +l+pi+iFI+p+s+e ++e+++    
     fk11077   585 KGKHCILDVSGNAIKRLQIA----QLYPISIFIKPKSMENIMEMNKR--- 627  

                   RgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLke
                    ++e+++++ +r++   ++e+ e       F++++++d+led+y  + k+
     fk11077   628 LTEEQARKTFERAMK-LEQEFTEH------FTAIVQGDTLEDIY-NQVKQ 669  

                   ileaeq<-*
                   i+e++    
     fk11077   670 IIEEQS    675  

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